Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 388 / 8e-125 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT2G36380 336 / 2e-105 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G66950 325 / 1e-101 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT1G59870 308 / 2e-95 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT1G15210 306 / 9e-95 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G16340 299 / 2e-92 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT3G30842 274 / 1e-83 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT2G26910 268 / 3e-81 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT3G53480 261 / 4e-79 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 259 / 4e-78 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034020 [exp] 565 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041685 [exp] 533 / 0 AT1G15520 1271 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 531 / 6e-179 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 526 / 6e-177 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 400 / 3e-129 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 351 / 7e-111 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041682 [exp] 307 / 1e-101 AT1G15520 325 / 2e-98 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008984 [exp] 324 / 2e-101 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10027727 [exp] 309 / 1e-100 AT1G66950 974 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G179000 [exp] 440 / 6e-144 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 437 / 4e-143 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 437 / 5e-143 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 432 / 3e-141 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 431 / 8e-141 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 416 / 4e-135 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 409 / 2e-132 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 378 / 6e-121 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 353 / 4e-112 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.008G024400 [exp] 319 / 2e-99 AT1G66950 2011 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000318 pacid=23173574 polypeptide=Lus10000318 locus=Lus10000318.g ID=Lus10000318.BGIv1.0 annot-version=v1.0 ATGGAGGGTGGAGATCTGTATAAAGCAGGGAACAGTCTACGACGAGTTGGGTCAGCTTCAATATGGCGAAACAATACTACTGACGCATTCTCTGCTTCTA CACGAGAAGAAGACGACGAGGAAGCCCTGAAATGGGCTTCCCTCGAAAGACTTCCGACTTACGATCGACTCAGGAAAGGTATATTGGCTAGTGCTTCCAA GACTGAACTCAGCGAGATCGATATTCATAACCTTGGTGTCGAAGAGAGGAAAGTGCTGCTGGATCGCCTTGTTAAGGTTGCTGATCAGGATAACGAGAAG TTCTTGCTCAAACTCAAACACCGAATTGACAGAGTTGGAGTTGAGTTGCCAACCATTGAAGTTCGATATGAGAATCTCAATGTTGAAGCTGAAGCTGAAG TTGGGAGTAAAGCTCTACCTACATTCATCAACTTCACTGTTGGGATATTTCAGAGTATCTTCAATGCTCTCCATCTCCTTCCTAACAACAAGAGACATCT CACAATCCTCAAGGATATTAGTGGAGTTATCAAACCATCGAGAATGACATTGCTTCTTGGTCCTCCAAGCTCAGGGAAAACAAGTCTTTTGTTAGCTCTT GCAGGAAGATTGGATCCAAACCTTAAGGTTTCTGGGAGGGTTACTTATAATGGTCATGAGATGAATGAATTCATTCCACAGAAAACTTCAGCATATATTA GTCAGCATGATCTTCACATGGGAGAGTTGACTGTCAGGGAAACTTTCTCCTTTGCAGCTAGAGTCCAGGGAGTTGGATCTTTTCATGATATGTTGGCTGA GTTGTCTAGAAGAGAAAAGGCAGCAAATATCAAGCCTGATCCTGATATTGATGTTTTCATGAAGGTGAGTGATTTCTTCTTTACTATCAATACAATCATT TTGACATATATATGA
AA sequence Show only first row Show all	>Lus10000318 pacid=23173574 polypeptide=Lus10000318 locus=Lus10000318.g ID=Lus10000318.BGIv1.0 annot-version=v1.0 MEGGDLYKAGNSLRRVGSASIWRNNTTDAFSASTREEDDEEALKWASLERLPTYDRLRKGILASASKTELSEIDIHNLGVEERKVLLDRLVKVADQDNEK FLLKLKHRIDRVGVELPTIEVRYENLNVEAEAEVGSKALPTFINFTVGIFQSIFNALHLLPNNKRHLTILKDISGVIKPSRMTLLLGPPSSGKTSLLLAL AGRLDPNLKVSGRVTYNGHEMNEFIPQKTSAYISQHDLHMGELTVRETFSFAARVQGVGSFHDMLAELSRREKAANIKPDPDIDVFMKVSDFFFTINTII LTYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10000318 [exp]	0	1
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	3.6	0.9286
AT4G34800			SAUR-like auxin-responsive pro...		Lus10012182 [exp]	4.5	0.9094
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	5.7	0.9224
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	6.2	0.9202
AT2G36100		CASP1	Casparian strip membrane domai...		Lus10021332 [exp]	7.7	0.9066
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10034020 [exp]	7.7	0.9047
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	9.5	0.9008
AT5G46060			Protein of unknown function, D...		Lus10013944 [exp]	9.9	0.8826
AT2G27370		CASP3	Casparian strip membrane domai...		Lus10017008 [exp]	13.3	0.8991
AT2G17080			Arabidopsis protein of unknown...		Lus10025121 [exp]	13.4	0.8711

Compare expression of checked genes

Lus10000318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.