Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 180 / 2e-51 HXXXD-type acyl-transferase family protein (.1) AT5G47950 169 / 1e-47 HXXXD-type acyl-transferase family protein (.1) AT4G15390 160 / 6e-44 HXXXD-type acyl-transferase family protein (.1) AT3G30280 155 / 3e-42 HXXXD-type acyl-transferase family protein (.1) AT1G24430 150 / 2e-40 HXXXD-type acyl-transferase family protein (.1) AT5G47980 137 / 8e-36 HXXXD-type acyl-transferase family protein (.1) AT1G24420 137 / 8e-36 HXXXD-type acyl-transferase family protein (.1) AT5G23970 133 / 2e-34 HXXXD-type acyl-transferase family protein (.1) AT4G15400 127 / 3e-32 HXXXD-type acyl-transferase family protein (.1) AT2G19070 90 / 3e-19 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004441 [exp] 655 / 0 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 444 / 1e-153 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 430 / 4e-148 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10042994 [exp] 367 / 9e-124 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 362 / 1e-121 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10034019 [exp] 325 / 4e-110 AT5G47950 84 / 2e-18 HXXXD-type acyl-transferase family protein (.1) Lus10025867 [exp] 327 / 5e-109 AT3G26040 155 / 2e-43 HXXXD-type acyl-transferase family protein (.1) Lus10036126 [exp] 308 / 5e-100 AT3G26040 189 / 6e-55 HXXXD-type acyl-transferase family protein (.1) Lus10036077 [exp] 301 / 3e-97 AT1G24420 188 / 2e-54 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124156 [exp] 281 / 4e-90 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 280 / 1e-89 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 280 / 1e-89 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 279 / 3e-89 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 279 / 3e-89 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 279 / 3e-89 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 274 / 7e-87 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 270 / 9e-86 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 262 / 1e-82 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 236 / 7e-73 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10000319 pacid=23173575 polypeptide=Lus10000319 locus=Lus10000319.g ID=Lus10000319.BGIv1.0 annot-version=v1.0 ATGGAAGTGTCGGTGATCTCAACCGTGAATGTGAAACCATTTTCAGCAACAACTACTGATGATGTTGAGAATTTCAAACCATACAAGCTCAGCATGCTTG ACCAGCTCTCACCCTCCACCTATTCTCCAGTCATCTACTTCTACCCATTTAAACCCAACAGTACTACAAGTGATTCCGTACCCTCCAAGCTAAAGGCCTC ACTCTCCAAGACACTTGATCTCTTCTACCCTCTATCCGGACGAGTTCAAGCAAACAACAACCTCTTCATCCACGACTTCCATCAAGGAGTCCCGTTCACC GAGGCTCGAATCCACGGCCACCGCCTTGCCGATTTCTTGCAGCCTCCGAAACTCGAGTTCCTCAACAACTTGCTCCCCTTTGAGCCCCTTTGTCTCCATC CACGTAACGGTCCCCAAGTCGCCGTCCAACTTAACACGTTTGACTGCGGCGGGATTGCCCTTGGGGTTAACTTTTACCACCGGATCATCGACGGGGCCAC TTTCAGCGCATTCCTCAAGACATGGGCCGCTAACGCAAACCCAAACCCAAACCAATACCTGGGTGAACCGGATTTAGTGAGTGGTTCCTCTGTTTTCCCT CCACACGAGTCATTTCCTGCCGAGATCCAAACGTTCATGGATAAGCTGTACTTTCCAGACCAGGGAGCTGGAAGACAGAGGGCGACTAGGAGGTTCGTTT TCAAAAACGACGCCGTATCAGCTTTGAAGTCGATCGCAAGGAGTGATAAAGTCGAAACACCGAGTCGGAATGAAACCCTATCGGCTTTCATTTGGAATTC CGTAATGCAGGCAACTGCAGCTTCTGGGTCGCCTAACCCACTTGAGTGTTTCACACAAGCAGTGAATATGAGATCCAGAATGGGGCAACGGCTGTCCAGT AACTCCATTGGGAATCTAGTGGCAGGGCCATTAGTTTCTTGCAAAAGCAGCAACGAATTATTGGATGATGGAATATGGAAGGAGCTGGTGGAGAAGATCA GAAATGGAGTTGCGGGTACCAACGAGAACTACCTGAATGCAATCTCCGGGGTGGATGGGGACGCATTCTTGGCCGGATTTACTAGTAGCGGGAGCAGCCA AACAGCTGCTCTGGTTTATTCAAGCTGGACCGGGTTTGGTTTTAATGATTTTGAATTCGGGTTTGGAAAGCCCGTTTGGACTGGGTTGCTTGGACATGCT ACAGGGAATCATCCTACTTTCAAGAGTTCAGTGATTTTGAAGGAAGTTGGTGCTAGTGGCAGTGAAAACGATGATGGACTTGAGGCATGGATAAGACTTG ACGAGCAAGTCGTGGCTGCTCTTGAACGAGATCTTCACTTCTTGAAATATGCATCTCCCAATCCGCCTATCATTATCAACTGA
AA sequence Show only first row Show all	>Lus10000319 pacid=23173575 polypeptide=Lus10000319 locus=Lus10000319.g ID=Lus10000319.BGIv1.0 annot-version=v1.0 MEVSVISTVNVKPFSATTTDDVENFKPYKLSMLDQLSPSTYSPVIYFYPFKPNSTTSDSVPSKLKASLSKTLDLFYPLSGRVQANNNLFIHDFHQGVPFT EARIHGHRLADFLQPPKLEFLNNLLPFEPLCLHPRNGPQVAVQLNTFDCGGIALGVNFYHRIIDGATFSAFLKTWAANANPNPNQYLGEPDLVSGSSVFP PHESFPAEIQTFMDKLYFPDQGAGRQRATRRFVFKNDAVSALKSIARSDKVETPSRNETLSAFIWNSVMQATAASGSPNPLECFTQAVNMRSRMGQRLSS NSIGNLVAGPLVSCKSSNELLDDGIWKELVEKIRNGVAGTNENYLNAISGVDGDAFLAGFTSSGSSQTAALVYSSWTGFGFNDFEFGFGKPVWTGLLGHA TGNHPTFKSSVILKEVGASGSENDDGLEAWIRLDEQVVAALERDLHFLKYASPNPPIIIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10000319 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10001107 [exp]	2.4	0.8789
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10012759 [exp]	4.6	0.8716
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029331 [exp]	5.1	0.8723
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10031674 [exp]	5.9	0.8536
AT1G47670			Transmembrane amino acid trans...		Lus10023971 [exp]	7.3	0.7822
AT3G56380		ARR17	response regulator 17 (.1)		Lus10029027 [exp]	13.0	0.7340
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016209 [exp]	17.1	0.6939
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004441 [exp]	17.5	0.8577
AT2G39170			unknown protein		Lus10028816 [exp]	21.7	0.7788
AT5G01740			Nuclear transport factor 2 (NT...		Lus10029439 [exp]	21.8	0.7614

Compare expression of checked genes

Lus10000319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.