Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22130 201 / 9e-62 PNT1 PEANUT 1, mannosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013349 [exp] 251 / 2e-81 AT5G22130 633 / 0.0 PEANUT 1, mannosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G031500 [exp] 208 / 6e-65 AT5G22130 644 / 0.0 PEANUT 1, mannosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF05007 [flax] [poplar] Mannosyl_trans Mannosyltransferase (PIG-M)
Representative CDS sequence Show only first row Show all	>Lus10000321 pacid=23140018 polypeptide=Lus10000321 locus=Lus10000321.g ID=Lus10000321.BGIv1.0 annot-version=v1.0 ATGGCGGGACGCCCACATGGAAGTCCCCTACACCGACGTCGATTACTTTGTCTTCTCCGACGCAGCTTCTCTAATGGCTTCTGGATCGTCTCCTTACAAG AGAACAACCTACCGCTACTCTCCTTTGCTCGCTTTCCTCCTGATCCCCAACTCAATTCTGCACCGCTCTTGGGGAAATTCATCTTCTCCGCTTCAGATCT GCTAGTTGGGTACTTGATACACAAGATATTGAAGCAACGTAAGGTGTCTGAGGAACTATGCTTATACTCTGTAATTGTATGGCTCCTCAACCCATTTACC TTCACCATTGGAACCCGTGGCAACTGTGAGCCCATTGTTTGTGCCATGGTTTTGTGGATCCTTATCTGTCTGATGAATGGTAAAATTATCCAAGCAGCAG TTTGGTATGGACTCGTCGTACATTTCAGAATCTATCCGATAATCTATGCTCTCCCTATCGTTTTGGTTCTTGATCCACATTTCGTTAAACTGGGGAAGAA GCCTCTCCTTGTGAACTGGAAATCTAGTAATGATGGAAAGGCGTCCCAAAGCAGCGAGGAATTTCGTGCAGGATCTTCCATTCTGCTTCTTCCTACAGAC AGTAGCCTTTGTAGCATTCAACAAGGTAATCACGGCGCAGTATTTCGTCTGGTTCTTCTGGCTGTTACCGCTGATCTTGCCATGGAGCAACATGAAGCTA AGATCATGGGAGGGATGGAGCTGCATAGTTGTGTGGATGGGAGCTTAGATGCATTGGCTGTTATGGGGTTATCTACTCGAATTTAG
AA sequence Show only first row Show all	>Lus10000321 pacid=23140018 polypeptide=Lus10000321 locus=Lus10000321.g ID=Lus10000321.BGIv1.0 annot-version=v1.0 MAGRPHGSPLHRRRLLCLLRRSFSNGFWIVSLQENNLPLLSFARFPPDPQLNSAPLLGKFIFSASDLLVGYLIHKILKQRKVSEELCLYSVIVWLLNPFT FTIGTRGNCEPIVCAMVLWILICLMNGKIIQAAVWYGLVVHFRIYPIIYALPIVLVLDPHFVKLGKKPLLVNWKSSNDGKASQSSEEFRAGSSILLLPTD SSLCSIQQGNHGAVFRLVLLAVTADLAMEQHEAKIMGGMELHSCVDGSLDALAVMGLSTRI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10000321 [exp]	0	1
AT1G19270		DA1	DA1 (.1)		Lus10010033 [exp]	2.8	0.8049
AT2G47020			Peptide chain release factor 1...		Lus10009980 [exp]	8.9	0.8176
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10025301 [exp]	11.4	0.8159
AT2G36360			Galactose oxidase/kelch repeat...		Lus10043424 [exp]	16.3	0.8050
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	16.9	0.8027
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	20.5	0.8103
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	21.0	0.8116
AT1G20410			Pseudouridine synthase family ...		Lus10021236 [exp]	24.4	0.7847
AT4G35530			phosphatidylinositolglycan-rel...		Lus10002922 [exp]	25.6	0.8042
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	30.7	0.8090

Compare expression of checked genes

Lus10000321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.