Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12990 57 / 6e-11 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G67880 52 / 4e-09 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT5G14480 38 / 0.0003 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006474 [exp] 0 / 1 AT1G12990 657 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10006475 [exp] 0 / 1 AT1G12990 654 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10003666 [exp] 0 / 1 AT3G27540 670 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10022281 [exp] 0 / 1 AT3G27540 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10035231 [exp] 0 / 1 AT3G27540 672 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10032088 [exp] 0 / 1 AT3G27540 676 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G046900 [exp] 62 / 1e-12 AT1G12990 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.008G186000 [exp] 0 / 1 AT1G12990 691 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000322 pacid=23174705 polypeptide=Lus10000322 locus=Lus10000322.g ID=Lus10000322.BGIv1.0 annot-version=v1.0 ATGTGGTGGATGATGGGGGAGAATGGCGGCCATTACTGCTCCAAGAAGACAGATGATATCTGTGCCGATGTTTGTGGCCAGCTTTGTTCTGAATGTGGAT TTGTTGCTTTTGTGATTCCAGGACTCAGGAAGGGTGTTGAGCATGTCCCGAATCAAGTGCATTCTCCGCGGATTCGACCTAAAGACTTTACTGTTCTTCT TCATTCTAGTTCCAACTGTTGTATATGGGGTTTACTTACACGGCCAGCAGATCTCCTACTTCCTTAG
AA sequence Show only first row Show all	>Lus10000322 pacid=23174705 polypeptide=Lus10000322 locus=Lus10000322.g ID=Lus10000322.BGIv1.0 annot-version=v1.0 MWWMMGENGGHYCSKKTDDICADVCGQLCSECGFVAFVIPGLRKGVEHVPNQVHSPRIRPKDFTVLLHSSSNCCIWGLLTRPADLLLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10000322 [exp]	0	1
AT4G33625			unknown protein		Lus10007070 [exp]	1.4	0.8736
AT4G18060			SH3 domain-containing protein ...		Lus10004584 [exp]	4.5	0.8430
AT1G74160			unknown protein		Lus10021148 [exp]	5.1	0.8661
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	5.7	0.8443
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	8.1	0.8590
AT3G08030			Protein of unknown function, D...		Lus10029501 [exp]	10.9	0.8298
AT5G55960			unknown protein		Lus10016650 [exp]	12.7	0.7938
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	13.3	0.8280
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	15.9	0.8337
AT3G29030		ATEXP5, ATHEXPA...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10033011 [exp]	17.6	0.8222

Compare expression of checked genes

Lus10000322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.