Plant FIBer expression Database

Lus10000324 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013331
[exp]
223 / 3e-73 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G019900
[exp]
136 / 4e-39 ND /
Potri.001G218201
[exp]
113 / 2e-30 ND /
PFAM info
Representative CDS sequence
>Lus10000324 pacid=23149750 polypeptide=Lus10000324 locus=Lus10000324.g ID=Lus10000324.BGIv1.0 annot-version=v1.0
ATGTCTGAGGCCGCCGTCGAATCAGATCAACCGTCGTCATCCTCCTCCGCAGTCTACAGGTATAAAATGTTGAAACCATACAACAGTAGTGGTGGAGCAG
CTGAAGCAGTAGACTGCTGCACATTCATCAGCTTCGTCATCCTGCTGGCGCTCCTGGTGGGCGCCGTACCTGCAGTGACTCACCTCCTGATATCCCTCCA
GCCATCCCTACCAACCGCCGCAGTTGAATCATCATCAATCACCCTCCTCAACGTCTCATCAAGCCTAATCAAAGTCCGGTGGGACCTCACCTTCTCTATC
ACCAACCCCAACTCCCATGGCTTCTTCTACAATAGAGTCGTAGCCTACGCCGCCGACGGAAGCGGCTTCCGCTTTGCCAGCTTCACCATCCCCACATTTC
GCCAGCCGGGGCGTGGGACCACTTCCAAACTGTCCGCCAGCTTCCACTCGCTGGGCTTGGTGGTCAACGACTGCACGCGCAACGGGACCATCGTTGGGCC
GTGTGGGCCTGTTGACCTGAGGTTGGAGGTGGAACCTGCGGCGGTGTACGACAGGTGGACGTGGCCTGAGAAAGGGAACTTGGTGGAGGTTGAGTGTGAT
ATCATCAAGGTTGCTTTCGTGCCGGGAACGAGGAAGGTGGAGTTTGGGGCGGCAGGTTGTAGGTCGGACGGCGAGTGGAGGAGGTTGGAGGACAAGTGCC
GGACTATATTCTGGAACTATGTTTATGTTGCCGCCATGTGTCTTTGTATTTTGGCCTTTTCTCTATAA
AA sequence
>Lus10000324 pacid=23149750 polypeptide=Lus10000324 locus=Lus10000324.g ID=Lus10000324.BGIv1.0 annot-version=v1.0
MSEAAVESDQPSSSSSAVYRYKMLKPYNSSGGAAEAVDCCTFISFVILLALLVGAVPAVTHLLISLQPSLPTAAVESSSITLLNVSSSLIKVRWDLTFSI
TNPNSHGFFYNRVVAYAADGSGFRFASFTIPTFRQPGRGTTSKLSASFHSLGLVVNDCTRNGTIVGPCGPVDLRLEVEPAAVYDRWTWPEKGNLVEVECD
IIKVAFVPGTRKVEFGAAGCRSDGEWRRLEDKCRTIFWNYVYVAAMCLCILAFSL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35980 NHL10, YLS9, AT... YELLOW-LEAF-SPECIFIC GENE 9, A... Lus10000324
[exp]
0 1
AT2G47000 PGP4 ,MDR4, ABC... MULTIDRUG RESISTANCE 4, ARABID... Lus10009989
[exp]
7.2 0.8845
AT5G10940 ASG2 ALTERED SEED GERMINATION 2, tr... Lus10040538
[exp]
10.2 0.8824
AT5G19930 Protein of unknown function DU... Lus10033068
[exp]
14.0 0.8838
AT3G05290 AtPNC1, PNC1 peroxisomal adenine nucleotide... Lus10015188
[exp]
15.0 0.8947
AT3G62240 C2H2ZnF RING/U-box superfamily protein... Lus10038048
[exp]
21.8 0.8747
AT4G15420 Ubiquitin fusion degradation U... Lus10031538
[exp]
22.6 0.8594
AT2G18250 ATCOAD 4-phosphopantetheine adenylylt... Lus10014296
[exp]
30.4 0.8721
AT5G56260 Ribonuclease E inhibitor RraA/... Lus10027126
[exp]
33.2 0.8691
AT5G16180 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE ... Lus10017618
[exp]
37.5 0.8725
AT2G34750 RNA polymerase I specific tran... Lus10005693
[exp]
37.5 0.8512

Lus10000324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.