Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36220 496 / 3e-174 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT5G04330 430 / 2e-148 Cytochrome P450 superfamily protein (.1) AT3G26290 238 / 1e-73 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT4G31500 236 / 6e-73 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT3G26310 233 / 4e-72 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G07990 233 / 8e-72 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26320 231 / 5e-71 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26300 230 / 9e-71 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G44620 228 / 1e-69 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G12320 226 / 3e-69 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041511 [exp] 725 / 0 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10034300 [exp] 714 / 0 AT4G36220 668 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10022303 [exp] 709 / 0 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012582 [exp] 582 / 0 AT4G36220 578 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10028361 [exp] 541 / 0 AT4G36220 725 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10014273 [exp] 538 / 0 AT4G36220 721 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10025975 [exp] 535 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041811 [exp] 494 / 5e-174 AT4G36220 667 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012583 [exp] 341 / 3e-118 AT4G36220 313 / 8e-106 ferulic acid 5-hydroxylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117500 [exp] 525 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G016400 [exp] 519 / 0 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.009G123600 [exp] 483 / 2e-169 AT4G36220 672 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.016G137400 [exp] 260 / 5e-83 AT3G48310 366 / 4e-123 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.016G137600 [exp] 258 / 2e-81 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.006G141400 [exp] 258 / 5e-81 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 256 / 2e-80 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 254 / 3e-80 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G082900 [exp] 253 / 2e-79 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084700 [exp] 250 / 1e-78 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10000326 pacid=23175340 polypeptide=Lus10000326 locus=Lus10000326.g ID=Lus10000326.BGIv1.0 annot-version=v1.0 ATGAGGAAGATCACTGTCATGAAGCTCTTCAGCAGGAGGAGGGCTGAGAATTGGGACTCTGTTATGGACGAGATTTCTTCCATGGTTCAGACTGTGGCCG CCAACCCAGCTGGAAACCCCATCAACGTGGGGGAGCTTATATTCACCTTCACCATGAATCTTACTTATAAGGCCGCATTTGGCACCTCCACCAAGATGAA TAATCAGATGCAGGAGTTCATTAAGATACTCCAAGAGTTCTCTAGACTCTTTGGAGCGTTCAACATTGCTGACTTCATCCCCTTTCTTGGTTGGATGGAC CCACAAGGCCTTCATCCTAGGATGGTCAATGCAAGGTCCTCCCTCGACAATTTCATCGACCAAATCATGGACGATCATCTTCGTTCTCAAGATCAGGACG TTCGTAACCCCGACATGGTTGATGAGTTGCTTGCTTTCTACACTCATGATCAACCAACAAATAATTCCAATCTTGTCCTCGACGCAGCTGACTCCACCAC TACTGCACCAATTAAGCTCACCAAAGACAACATCAAAGCCATTATCATGGATGTCATGTTTGGTGGGACTGAGACTGTTGCTTCCATAATCGAGTGGGCT ATGGCCGAGCTGTTGAAGAGTCCTCAAGATTTGAAGCGGGTCCAGCAAGAGCTCACTGACGTTGTTGGCCTCAACCGCCACGTGGAAGAGATGGACTTGG AGAAGTTAACCTTCCTCAGGTGCATCTTGAAAGAGACTCTCCACCTCCACCCAGCGATCCCTCTCCTCCTCCACGAGACTTGTGAGGATGTTGAGGTGTC CGGTTACTTCATCCCCAAAAGGTCTCGAGTCATGGTTAATGCTTTTGCTATCGGCCGAGACCCCAACTTTTGGTCCAATCCTGACAAGTTCGACCCATCA AGGTTCTTGAATGAAGGCATGCCTGACTTCAAGGGCAACAACTTTGAGTTTTTGCCTTTCGGTTCGGGTCGTAGGTCATGTCCTGGCATGCAACTCGGTT TGTACGCTATTGAACTCGGAATGGCTCACTTGCTTCATGACTTTAACTGGGAATTACCATATGGGATGAAACCTGACGAAGTTGACATGAGTGATGTCTT TGGACTCACTGCTCCTCGTGCCACCCGACTCGTTGCCCTTCCTAGCTCTCGACTTGCCTGTTAA
AA sequence Show only first row Show all	>Lus10000326 pacid=23175340 polypeptide=Lus10000326 locus=Lus10000326.g ID=Lus10000326.BGIv1.0 annot-version=v1.0 MRKITVMKLFSRRRAENWDSVMDEISSMVQTVAANPAGNPINVGELIFTFTMNLTYKAAFGTSTKMNNQMQEFIKILQEFSRLFGAFNIADFIPFLGWMD PQGLHPRMVNARSSLDNFIDQIMDDHLRSQDQDVRNPDMVDELLAFYTHDQPTNNSNLVLDAADSTTTAPIKLTKDNIKAIIMDVMFGGTETVASIIEWA MAELLKSPQDLKRVQQELTDVVGLNRHVEEMDLEKLTFLRCILKETLHLHPAIPLLLHETCEDVEVSGYFIPKRSRVMVNAFAIGRDPNFWSNPDKFDPS RFLNEGMPDFKGNNFEFLPFGSGRRSCPGMQLGLYAIELGMAHLLHDFNWELPYGMKPDEVDMSDVFGLTAPRATRLVALPSSRLAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10000326 [exp]	0	1
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041831 [exp]	1.0	0.9560
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015746 [exp]	2.8	0.9202
AT4G05230			Ubiquitin-like superfamily pro...		Lus10007641 [exp]	3.5	0.9363
AT5G28470			Major facilitator superfamily ...		Lus10042182 [exp]	3.5	0.9190
AT3G02990	HSF	ATHSFA1E	heat shock transcription facto...		Lus10005925 [exp]	4.5	0.8992
					Lus10010270 [exp]	4.5	0.9388
					Lus10041745 [exp]	6.7	0.9201
					Lus10040421 [exp]	11.1	0.8538
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014227 [exp]	11.3	0.9118
AT5G07470		PMSR3, ATMSRA3	ARABIDOPSIS THALIANA METHIONIN...		Lus10013673 [exp]	13.0	0.8313

Compare expression of checked genes

Lus10000326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.