Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 164 / 1e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 159 / 2e-46 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 157 / 2e-46 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32070 156 / 1e-45 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 154 / 1e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT1G80780 153 / 2e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT5G10960 152 / 6e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27890 152 / 7e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44260 138 / 7e-39 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035078 [exp] 577 / 0 AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017905 [exp] 436 / 2e-154 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10001651 [exp] 429 / 1e-150 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 424 / 7e-150 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035077 [exp] 411 / 7e-145 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000561 [exp] 395 / 1e-138 AT1G61470 143 / 1e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10038113 [exp] 324 / 7e-112 AT3G44240 140 / 3e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10007771 [exp] 250 / 1e-81 AT1G61470 170 / 5e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029713 [exp] 238 / 4e-77 AT5G10960 144 / 4e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038700 [exp] 229 / 1e-73 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 159 / 1e-46 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 158 / 2e-46 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.018G020900 [exp] 149 / 7e-43 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 149 / 1e-42 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 148 / 1e-42 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G262500 [exp] 145 / 2e-41 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 144 / 3e-41 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 144 / 4e-41 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 140 / 1e-39 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10000327 pacid=23149795 polypeptide=Lus10000327 locus=Lus10000327.g ID=Lus10000327.BGIv1.0 annot-version=v1.0 ATGGGTTTTCTCGTGAGGGAAGTCTGGGACGAAAATCTCCGTCAAGAATTGAAAGCCATGGAAGAATGTCTGGCCAAGTACCCAGTTATATCAGTCGACT CCGAATTCCCAGGCTTCCTCCGTCAAACGCCGAGATACGCTTCCGAGGAGCTCCGATTTGAGAACTTGAAGTACAACGTCGGCCAAACCTCTCTCGTTCA ATTAGGGCTCACTCTCTCAAACACAAAAGGCACCGTCGGCGGAATCTGGCAATTCAACTTCCAATTCGATCTAGACAGCGATCTCCACTGCCCAAATTCG ATCCAATTTTTAATCCTCCACGGCATCGATTTCAACAAGCTCAAAACCTACGGGATTGACCGGGTCAAATTTGGCACGGTGTTCGGAAGGCTGATTGCGA GAAGGAAGAGTTCGATTACGTGGATTACTTTCCACGGCGTGTACGACCTCGCCCATATTGTGAAGGCGGTGAGTTTCCGTCCGGTTGCGGAATCGTCGGC GGAATTCGTTGACGTTTTGGGGAGGGGGTTTGACTCGGTTGTTGATGTGAAATACATGGCTAAGTTTTATCAAGGGACAGGGAGTGAAATTGGATTGCAG AAGTTGGCTGATAATTTAGGGGTTAAGAGAAGAGGGGAAGCTCATACGGCTGCTTCCGACAGTTTGTTGACGGCGCTGGTTTACTTCAAGCTGAAGAAGA AGCTGAAGCAGCAGGGGATTGAGGAAAACGTTTACTTTGACTTGGTGTATGGAATTAGTTCCAGAATCTCTAGGGAGTTCATCAATGCTACTGCTGCTGC TGCTGCTCTTGTGTATCAGGGGGATATGGTGTATGCGAATCCGTATTACAAGAGGAATTTGGCTGCCGAATTGATGATGATGGGTCATTGGGATTATTGC TCCTCCACTACTGGTGCAACACCAGTGTCATCTCTGATCTACGGATGA
AA sequence Show only first row Show all	>Lus10000327 pacid=23149795 polypeptide=Lus10000327 locus=Lus10000327.g ID=Lus10000327.BGIv1.0 annot-version=v1.0 MGFLVREVWDENLRQELKAMEECLAKYPVISVDSEFPGFLRQTPRYASEELRFENLKYNVGQTSLVQLGLTLSNTKGTVGGIWQFNFQFDLDSDLHCPNS IQFLILHGIDFNKLKTYGIDRVKFGTVFGRLIARRKSSITWITFHGVYDLAHIVKAVSFRPVAESSAEFVDVLGRGFDSVVDVKYMAKFYQGTGSEIGLQ KLADNLGVKRRGEAHTAASDSLLTALVYFKLKKKLKQQGIEENVYFDLVYGISSRISREFINATAAAAALVYQGDMVYANPYYKRNLAAELMMMGHWDYC SSTTGATPVSSLIYG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06450			Polynucleotidyl transferase, r...		Lus10000327 [exp]	0	1
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	1.0	0.9803
AT4G34320			Protein of unknown function (D...		Lus10011295 [exp]	1.4	0.9688
AT1G64700			unknown protein		Lus10008274 [exp]	3.5	0.9642
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	3.5	0.9631
AT5G47390	MYB		myb-like transcription factor ...		Lus10040181 [exp]	3.6	0.9336
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	5.5	0.9423
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	6.7	0.9443
AT1G07160			Protein phosphatase 2C family ...		Lus10026381 [exp]	6.7	0.9384
AT5G38700			unknown protein		Lus10001456 [exp]	7.0	0.9418
AT5G18150			Methyltransferase-related prot...		Lus10034423 [exp]	7.7	0.9340

Compare expression of checked genes

Lus10000327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.