Plant FIBer expression Database

Lus10000328 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G26170 597 / 0 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035079
[exp]
909 / 0 AT1G26170 1225 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T108626
[exp]
635 / 0 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1)
Potri.008G109300
[exp]
632 / 0 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10000328 pacid=23149794 polypeptide=Lus10000328 locus=Lus10000328.g ID=Lus10000328.BGIv1.0 annot-version=v1.0
ATGACTTCTTGTGGTTTAGAGGGAATCAATGCGGTCATAGATGCTTCAAGACAAAGGTTCAGCGAATCCCAACAACAAAAGGCTGTTGGTTCAGCAGTGT
GGTGGAGAATAAGGGAGGCAGCACTCTTTGCGTTGGCATCAGTTTCAGATCAATTACTCGAAGCTGAGGTATTCTTACAGCCTATTAGTCACGTGGTCCT
TGAGCAATTCCTTTATGCTGCAATGAAAACTGTTGGCATGGATGTTCCCCCTCCGGTGAAGGTAGGTGCTTGCCAAGCTCTTTCTCAGCTCCTCCCTGAA
GCTAATAAAGGGATTGTCCAATCTCAATTGATAGGTTTATTGTCATCTCTTGCAGATCTACTTCAACAGGCATCTGATGAAACTTTGCACCTAGTCCTTG
AAACACTGCAAGCTGCTATTAAGGCAGGTTATGAAATATCGGTAGCAATTGAGTCTACGATCTCACCCGTGATTTTGAATGTGTGGGCATCACATATTTC
GGACCCTTTTATTGGTATTGATGCAATTGAAGTCTTGGAGGCCATAAAAAATGCCCCTGGCTGTATTCATCCATTGGTTTCTCGAGTTCAGCCTCATATC
GGTCCAATTTTGAACAAGGCAATTAATGTTCATATTGCTGACCTCTTGACACCTTCTTGTGTTAATTGTCAGCCACGTGAACAGCCTGAAGGATTGGTAG
CTGGATCACTTGATCTGAATGCTCCAATGGACATTGTGAGAGTACTATATGATGGTTGCTTTGATGCCATCACTAGGATTGTCCTTCAGAGTGATGATCA
TAGTGAACTGCAGAATGCAACTCAATGTTTGGCTGCTTTTATTTCTGGGGGGAGACAAGAAGTGCTTGCTTGGGCTGTTGATTCTGGGTTTGCAATGAGA
AGTTTGCTTGATGTAACATCAAGGCTTCTTGATCCAAGTCTTGAAAGCTCTGGCTCTCTTTTTGTTGGGAATTACACTTTGCAACTGATTTTGCATCTTC
CACAACAGATGGCACAACATACCCCTGACCTTATTGCTGCTCTTGTTAGAAGAATGCAGTCTGCTCAAATAGCTGGATTGAGAAGCTCCTTGATAGTCCT
TTTCGCTCGATTGGTCCACATGAGTGCCCCTAATGTGGAACAGTTCATCAATATGCTAGTTAGTATCCCAGCCGAGGGCCATGATAATGCCTTTGTTTAT
GTCATGTCAGAATGGACAAAACAACAAGGTATTAACCGTCCTGTTCCCCAAGACTGGACTACGGAAGGGATAACTACACGCTCAAAGGCTAAAGTTAATC
CTGAGAAGTGGACAATGGTGCCACTGCCTTTTAAGATAGTGTCTTTACTAGCTGACACACTGATTGAAATGCGGGAACAAGTGCAGCTTGATGATGAAGA
GGATATTGAATGGGAAGAAATTGAAGAATACGATGGCGATGATAGAGACTTGCTGTATTCAGCCGCTGCTGTATCATCCGGAAGGGCCACTTACGAAGAA
CTTGAAGCCATGGCAAAAGCATTTGACGGGGATCAAGGGGATGACAATGAGCTATTAAGTGCCGGGGATCCATTAAACCAGATTAATGTGGCATCTTATC
TTGGTGACTTCTTTACAAAGTTGTGGAATGGAGACAGATCGCTGTTTGAGAATTTGTGCCAGGTTTGCACCGTTTCATCTAAAAGCAATTTGCTGGAATC
TTACTTTCAAGTTCTACCCCACTACCTTTTCCATTGCTGA
AA sequence
>Lus10000328 pacid=23149794 polypeptide=Lus10000328 locus=Lus10000328.g ID=Lus10000328.BGIv1.0 annot-version=v1.0
MTSCGLEGINAVIDASRQRFSESQQQKAVGSAVWWRIREAALFALASVSDQLLEAEVFLQPISHVVLEQFLYAAMKTVGMDVPPPVKVGACQALSQLLPE
ANKGIVQSQLIGLLSSLADLLQQASDETLHLVLETLQAAIKAGYEISVAIESTISPVILNVWASHISDPFIGIDAIEVLEAIKNAPGCIHPLVSRVQPHI
GPILNKAINVHIADLLTPSCVNCQPREQPEGLVAGSLDLNAPMDIVRVLYDGCFDAITRIVLQSDDHSELQNATQCLAAFISGGRQEVLAWAVDSGFAMR
SLLDVTSRLLDPSLESSGSLFVGNYTLQLILHLPQQMAQHTPDLIAALVRRMQSAQIAGLRSSLIVLFARLVHMSAPNVEQFINMLVSIPAEGHDNAFVY
VMSEWTKQQGINRPVPQDWTTEGITTRSKAKVNPEKWTMVPLPFKIVSLLADTLIEMREQVQLDDEEDIEWEEIEEYDGDDRDLLYSAAAVSSGRATYEE
LEAMAKAFDGDQGDDNELLSAGDPLNQINVASYLGDFFTKLWNGDRSLFENLCQVCTVSSKSNLLESYFQVLPHYLFHC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G26170 ARM repeat superfamily protein... Lus10000328
[exp]
0 1
AT5G15920 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structu... Lus10029476
[exp]
3.6 0.8826
AT5G57120 unknown protein Lus10001434
[exp]
4.2 0.8244
AT5G26680 5'-3' exonuclease family prote... Lus10000270
[exp]
7.7 0.8269
AT2G17250 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-b... Lus10001388
[exp]
8.1 0.8038
AT1G40087 Plant transposase (Ptta/En/Spm... Lus10035798
[exp]
8.9 0.8385
AT4G32520 AtSHMT3, SHM3 serine hydroxymethyltransferas... Lus10022391
[exp]
12.0 0.7801
AT5G67240 SDN3 small RNA degrading nuclease 3... Lus10011504
[exp]
12.8 0.8268
AT1G09760 U2A' U2 small nuclear ribonucleopro... Lus10000970
[exp]
15.6 0.8188
AT3G56990 EDA7 embryo sac development arrest ... Lus10019107
[exp]
16.2 0.8242
AT1G16280 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis tha... Lus10042754
[exp]
24.1 0.8176

Lus10000328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.