Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 48 / 1e-06 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G31540 40 / 0.0006 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G18370 39 / 0.0009 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G33300 39 / 0.001 ADR1-L1 ADR1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000331 [exp] 249 / 2e-77 AT5G36930 217 / 1e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004719 [exp] 137 / 9e-38 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008525 [exp] 130 / 2e-37 AT3G44670 52 / 4e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002248 [exp] 133 / 4e-37 AT5G40060 42 / 0.001 Disease resistance protein (NBS-LRR class) family (.1) Lus10008516 [exp] 134 / 7e-37 AT4G27220 59 / 1e-08 NB-ARC domain-containing disease resistance protein (.1) Lus10004726 [exp] 134 / 1e-36 AT5G36930 167 / 5e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008526 [exp] 132 / 4e-36 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000738 [exp] 129 / 8e-35 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 117 / 9e-31 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T005501 [exp] 45 / 1e-05 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G030700 [exp] 43 / 4e-05 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.014G035700 [exp] 43 / 5e-05 AT4G33300 889 / 0.0 ADR1-like 1 (.1.2) Potri.009G081000 [exp] 42 / 6e-05 AT3G14470 257 / 2e-72 NB-ARC domain-containing disease resistance protein (.1) Potri.013G037599 [exp] 42 / 7e-05 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G027300 [exp] 42 / 8e-05 AT4G27190 244 / 8e-66 NB-ARC domain-containing disease resistance protein (.1) Potri.017G138100 [exp] 41 / 0.0002 AT3G14470 397 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.017G136400 [exp] 40 / 0.0003 AT3G14470 413 / 5e-128 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 40 / 0.0006 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000329 pacid=23159276 polypeptide=Lus10000329 locus=Lus10000329.g ID=Lus10000329.BGIv1.0 annot-version=v1.0 ATGGTAATAGGTTTCTGTCCGCAACTGGAGGTTGGTCCGTTGATACGAGGTTTATCAAATTTCCTAGTGCTCAAGACCTTGATTCTCGCGAAGGTGAAAA TTAATCATCAGCTCGAGGGGATTGGATCCCTTGAAGAGTTAGAGGCTTTAGCTATGTCGAATGTGCTACCTTCAATAGAGAGAATACCTTCATTGTCAAG GTTGCAAAAACTGAGAGAGCTAGACATAACGGGTACTCCGAGTTTGCGGGAGATCCAAGGGCTTGGAGAATTGAAGTCTTTAGAGGATCTTAATCTGCAA GACTGCCCTTCATTGGAGAGATTATGGCCCGCGGATGATCAACCATTATTCCCTAGCCTGAAGAAACTCGACATCCGGAACTGCAAAAGCTTGAGTGTTG AACATCTCTCTACTCTCAAGACCAGTCTACCCAACGTGAAAATCCAGTGGCCCGATGAGCCCATCGGCGAAGACTATGACACAACAAGCGACGTGGATGA TGAGTGA
AA sequence Show only first row Show all	>Lus10000329 pacid=23159276 polypeptide=Lus10000329 locus=Lus10000329.g ID=Lus10000329.BGIv1.0 annot-version=v1.0 MVIGFCPQLEVGPLIRGLSNFLVLKTLILAKVKINHQLEGIGSLEELEALAMSNVLPSIERIPSLSRLQKLRELDITGTPSLREIQGLGELKSLEDLNLQ DCPSLERLWPADDQPLFPSLKKLDIRNCKSLSVEHLSTLKTSLPNVKIQWPDEPIGEDYDTTSDVDDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40100			Disease resistance protein (TI...		Lus10000329 [exp]	0	1
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	2.4	0.9529
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	2.8	0.9478
AT3G18670			Ankyrin repeat family protein ...		Lus10016672 [exp]	4.2	0.9227
AT2G30990			Protein of unknown function (D...		Lus10029830 [exp]	4.5	0.9321
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	5.7	0.9328
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10024424 [exp]	7.2	0.8551
AT1G05170			Galactosyltransferase family p...		Lus10027185 [exp]	8.0	0.8482
AT5G36930			Disease resistance protein (TI...		Lus10007809 [exp]	8.7	0.8947
AT5G36930			Disease resistance protein (TI...		Lus10007813 [exp]	8.8	0.9062
AT2G20362			unknown protein		Lus10022860 [exp]	11.8	0.9067

Compare expression of checked genes

Lus10000329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.