Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05200 276 / 7e-90 ATL6 RING/U-box superfamily protein (.1) AT5G27420 243 / 3e-77 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT1G72200 196 / 2e-58 RING/U-box superfamily protein (.1) AT1G22500 191 / 8e-57 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT4G09120 177 / 3e-52 RING/U-box superfamily protein (.1) AT2G35000 173 / 4e-50 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT1G35330 168 / 8e-49 RING/U-box superfamily protein (.1) AT4G09130 168 / 2e-48 RING/U-box superfamily protein (.1) AT4G40070 163 / 4e-47 RING/U-box superfamily protein (.1) AT2G34990 151 / 1e-42 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004460 [exp] 655 / 0 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10029949 [exp] 453 / 3e-161 AT3G05200 171 / 1e-50 RING/U-box superfamily protein (.1) Lus10031515 [exp] 362 / 4e-124 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 352 / 1e-120 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10029794 [exp] 184 / 1e-53 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10036466 [exp] 177 / 2e-51 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10041134 [exp] 174 / 3e-50 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10000487 [exp] 130 / 1e-34 AT4G17920 196 / 4e-61 RING/U-box superfamily protein (.1) Lus10004572 [exp] 123 / 7e-32 AT4G17920 209 / 3e-66 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025800 [exp] 338 / 5e-114 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 333 / 6e-112 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 214 / 3e-65 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.001G140900 [exp] 124 / 1e-32 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 122 / 6e-32 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 103 / 3e-24 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 100 / 5e-23 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 100 / 6e-23 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 97 / 1e-22 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.010G243200 [exp] 94 / 1e-22 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10000333 pacid=23160113 polypeptide=Lus10000333 locus=Lus10000333.g ID=Lus10000333.BGIv1.0 annot-version=v1.0 ATGGCCGCTACCGCCGCCGCCGTCTTTTTCTCCCTACTCCTCATCTCTGCTGCCACGGCGCAGCAGCCTTCGCCGGACCAAAACGGACCGCGTGACCCCT ACGCGTACCAGCGGATCCCCCCGTCGATGGCGATCATTATCGTCGTCCTGATCGCCGCCCTCTTCCTGATGGGATTCTTCTCGATCTACCTCCGCCAGTG CTCCGAGTCCAACTCTGCCGTCGGCAGCATCCGCAATCTTGGCAGATCTCGCCGCGCCGCGGCGGCGGCTGCTCGCGGACTGGATCAATCCGTTATCGAG ACGTTCCCGACGATGGTGTACTCCGCCGTCAAGGGGCTGAAGATCGGGAAAGGAGCGCTGGAGTGCGCCGTATGCTTGAACGAATTCGACGATGACGAAA TGCTGCGTTTGATTCCGAAGTGCGATCACGTTTTCCACCCCGAGTGTATTGATGCTTGGCTTGAATCTCACACGACTTGCCCCGTTTGTAGAGCTGAATT GACTCCTCAGCCGGAGGATTCGACGCCGAGTCAACAACCCGAGTTGACGGCGGCGGGTTATACTCAGACCGAGTCGGATGTAGAAGCTGGACGGGTAACC GACACCGTTTCGGAGCCACAAATTGACAGCGAGGACCGCGTGAATGCGGAGGTTCCGGAGGTGATGAGCGTGAACCAAGTCTTGAGTAGGAACCGGACAC GTGGATCCAGATCAGGAAGGCCACGTAAGTTCCCCAGGTCCCACTCAACGGGTCATTCTCTGGTCCAACCGGGTGAGAATACCGACCGGTTCACCTTGAA GCTACCGGTCGATGTTAGGAAGCAACTAATGGACAAGGAGCTGAACCGAACTTCGAGCATGGTCGGGTTTCCAAGAGAAGGGAGTACTAGGCGTGGGTAT CGAACCGGTGAAGGTAGTAGTAGAGGCAAGCACTTGAGTTACAAGCGGTTGGATGATACGTTGGAGAAGGGAGCCAAATCGGACCGGTGGGTGTTTAACC GGACTCCGTCGTTCTTGGCCAGGGCATCGTCGTTCTTGACCAGGGCATCTCCGTCTGTACGGTCCCCTAGGGTTGCAGCTGGGGAAGGGTCGTCGCTTCG ATCGCCACGACTAGTATCAAGGGACGGGGAAGGTTCTTCGAGTAGGCCGGTTGGGCAAGGTACGACCCAATCGGTCCGACCTCCAGTCTGA
AA sequence Show only first row Show all	>Lus10000333 pacid=23160113 polypeptide=Lus10000333 locus=Lus10000333.g ID=Lus10000333.BGIv1.0 annot-version=v1.0 MAATAAAVFFSLLLISAATAQQPSPDQNGPRDPYAYQRIPPSMAIIIVVLIAALFLMGFFSIYLRQCSESNSAVGSIRNLGRSRRAAAAAARGLDQSVIE TFPTMVYSAVKGLKIGKGALECAVCLNEFDDDEMLRLIPKCDHVFHPECIDAWLESHTTCPVCRAELTPQPEDSTPSQQPELTAAGYTQTESDVEAGRVT DTVSEPQIDSEDRVNAEVPEVMSVNQVLSRNRTRGSRSGRPRKFPRSHSTGHSLVQPGENTDRFTLKLPVDVRKQLMDKELNRTSSMVGFPREGSTRRGY RTGEGSSRGKHLSYKRLDDTLEKGAKSDRWVFNRTPSFLARASSFLTRASPSVRSPRVAAGEGSSLRSPRLVSRDGEGSSSRPVGQGTTQSVRPPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10000333 [exp]	0	1
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	1.7	0.9936
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	2.8	0.9924
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021137 [exp]	3.0	0.9929
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	4.9	0.9931
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	7.4	0.9892
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	7.9	0.9899
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	9.0	0.9894
AT2G46620			P-loop containing nucleoside t...		Lus10008834 [exp]	10.8	0.9841
					Lus10040445 [exp]	11.3	0.9877
AT5G37490			ARM repeat superfamily protein...		Lus10001079 [exp]	12.5	0.9900

Compare expression of checked genes

Lus10000333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.