Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41990 587 / 0 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 530 / 1e-180 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1) AT3G18750 488 / 2e-163 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 485 / 1e-162 WNK7 Protein kinase superfamily protein (.1.2) AT3G04910 417 / 4e-134 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G22420 411 / 7e-134 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G48260 404 / 1e-131 WNK3 with no lysine (K) kinase 3 (.1) AT5G28080 401 / 5e-131 WNK9 Protein kinase superfamily protein (.1.2) AT3G51630 399 / 2e-129 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 374 / 1e-119 ZIK2, WNK4 with no lysine (K) kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033225 [exp] 1061 / 0 AT5G41990 620 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10003215 [exp] 787 / 0 AT5G41990 585 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10017318 [exp] 699 / 0 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10030229 [exp] 541 / 0 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10005983 [exp] 526 / 2e-175 AT3G18750 523 / 3e-178 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10041947 [exp] 429 / 1e-140 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 430 / 1e-135 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10020236 [exp] 409 / 4e-131 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10010547 [exp] 407 / 6e-131 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145300 [exp] 677 / 0 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.001G085500 [exp] 652 / 0 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.014G101500 [exp] 523 / 3e-175 AT3G18750 564 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Potri.008G037200 [exp] 507 / 2e-171 AT5G41990 429 / 8e-145 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.005G057300 [exp] 496 / 3e-165 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G086700 [exp] 436 / 5e-143 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 433 / 7e-142 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.010G087900 [exp] 433 / 4e-140 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 432 / 6e-140 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.013G036300 [exp] 425 / 4e-137 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10000334 pacid=23163523 polypeptide=Lus10000334 locus=Lus10000334.g ID=Lus10000334.BGIv1.0 annot-version=v1.0 ATGACGAGGGTCTTGAAGGAAAATCCAAGCCAAATCGAACCTAGGTACCTAATTGACGGGAAGATCTATACCTCAAGAGAAAGAGAGTATTTGAGCAAGA GAAAGGACGATAAGAACTCTGGGGTGTTAGAGTTACTAGCAAAGGTGTTGAGTTTCAAGTCAGAGAAGCCGAGTACTGAACGGACGAATGAGGATCAAAA TGGGGAGAAAGGCGTGTATTTGAATGATATTCTGCGGGAATATAAGGGGAAGCTTTATGTCCCGGAGCAAGTGTTTGGGGCTGAGTTGACTGAGGAAGAG GAGTCCAGTAGGGATGTAGAGGAGTTGCCAAAAATGAGCTTTGACGAGTTCAGGAAAGCTATGCAAACTGATAAGGTTAAGTTAGTGACGTCTAGGGAAG GAACAGTTTTAGGTCTTGGAAACGTTTATAAGGATTTTGTTGTAGACTTGAAAGAGATACCTGGGGTCAAAAGATTACACAGAACGAAATGGTTAGAATT CAGCTCTTCTTCCGTTCTAGCGTTTCCTGTGAGAATTCGTTTCGAGCTTGTCATTAATTATCACATTCAGTTTCTTGTTCACAGTTGGAAATCATTTTGT ATCAGGGTGGAGTGGAGCAAAGCAAAGCTGGCTCAGCTGGTCCAAGAAGCTGCCCTAGTAGCTGTCAGGCAAAGGCATACATCCATAATCGAATCAGACA TGAACGAAGCAGTAGATCGTCTTACTGTTGGTCCAAAGCTTAAAGGACTGGATTTGACCCATCAAGGCCAATGCCGTAGGGCTACCTCTGAAGTTGGTGT TGCAATAACTGCTCATCTGCTCAGGCGATACGAGAATGCACAAGTTGAATACTGCGATCGGATTTCAATAGTCCCCCGTGGTAAGTATGATGAGATCTTG GGCAGAGGGGCATTCAAGACTGTATATAAGGCATTTGATGAGGTTGACGGAATTGAAGTTGCTTGGAACCAAATGAACGTTGAAGATGCATTACAGACAC CAGAACAGTTGGAGAGGCTATATTCAGAGGTTCATCTGTTGAAGTCGCTGAAGCATGAAAATATCATCAAGTGTTACCACTCTTGGGTGGATGACAAGAC TAGAACCATTAACATGATAACAGAGCTGTTCACTTCTGGCTGTTTAAGGCAGTATCGCAAGAAGCATAATAATGTTGATTTGAAGGCTATCAAAAACTGG GCCAGGCAGATCCTGAAAGGGCTGAACTATTTGCACAGTCATAATCCTCCTATCATTCATCGGGATTTGAAATGTGACAATGTCTTTGTCAATGGACATA CTGGAGAAGTTAAAATTGGGGATCTTGGGTTGGCTGCTATCATGCAGCAGCCAACTGCCCGAAGTGTTATAGGTACTCCTGAATTCATGGCTCCAGAGCT ATATGATGAAGAATACACTGAACTTGTTGACATCTATTCCTTCGGCATGTGCATGCTAGAGATGGTTACTTGTGAATACCCCTATTGTGAATGCAGGAAT CCGGCTCAGATTTACCGGAAAGTTACCTCGGGTGTAAAGCCAGCATCGCTTACAAAAGTTGATAATCCTCAAGTTAAGGAGTTCATAGAGAAGTGTTTGG TCCCTGCTGCTGTGAGACTGCCTGCCATTGAACTCCTAAAAGACCCTTTTTTAGCAGCTGGAAGTCCAAAAGAAGTCATCCCTGATTCTCTTCAATTGTC AAGTCTGATGATCAGACAAGACAAATCGCTTCCCATGGAAATAGATAGTAACAGCAAGAAGTCATCAAAAAATTCTTGTACTGAAAGCTTGAACGAAGAC ATGCAGTTCTCCCCTCTCGAAGTTGAGAGATGCACAGAGACCAATGGTTTCAGGCTAAGAGGGGAAAAGAATACTGATAATACAATCTCAATGACTCTGC GTATTGCCGATCCATGTGGACGGGCAAGGATCATACACTTTACCTTTTTCCTGGAATCTGATACTACCATCACGATAGCAGAGGAGATGGTTGAACAACT TGGATTGCCAATGGAAGATGTTGCTGTGATTGCTGAATTGATTGACAGCTTGATAGTAAAGCTAGGAGCTAGCAGGAGTCCTTCATTATGCTGTGCTACG AGCATGCAGAATGGTTCATATGGAATACAAAGCAGTACAACTTCAAAGACAGGTGCTGATGACAGTAGTATTCAGCTTTTTGCGACTGGCAAGGATCAAG AAAATGGAACAACGATGAAATCCGACATTACTGCTGAATTATATTTCATAGGCGCAAACCAAAATTTGATGCCTGCTGATGACTATGCTGCGGGATTGGA TTCAAGCGAGATCAGCACATCAGACTTTGGGATGTTTGACGAAGGTAGAGTTGCACAGTATCCATCAAGGGGAAGTTCTATTGCGATTTCATCCTCCGAC ATGCCACAAAATCTGAGCTTGTCAAGTATATGCACTCTTTCCATTGCTGACAAAGAAGAGCACGATGAGCTGCAAGTGGAGCTTGCTGCGATCGATATGC AGTATAATATGCATCTCCAGGAACTGTCCAGGATGAGGGAGGAAGCCATGGAAAATGCGAAAAGGAAGTGGATGGCCAAGAAAAAATTGGCTGTTATGTG A
AA sequence Show only first row Show all	>Lus10000334 pacid=23163523 polypeptide=Lus10000334 locus=Lus10000334.g ID=Lus10000334.BGIv1.0 annot-version=v1.0 MTRVLKENPSQIEPRYLIDGKIYTSREREYLSKRKDDKNSGVLELLAKVLSFKSEKPSTERTNEDQNGEKGVYLNDILREYKGKLYVPEQVFGAELTEEE ESSRDVEELPKMSFDEFRKAMQTDKVKLVTSREGTVLGLGNVYKDFVVDLKEIPGVKRLHRTKWLEFSSSSVLAFPVRIRFELVINYHIQFLVHSWKSFC IRVEWSKAKLAQLVQEAALVAVRQRHTSIIESDMNEAVDRLTVGPKLKGLDLTHQGQCRRATSEVGVAITAHLLRRYENAQVEYCDRISIVPRGKYDEIL GRGAFKTVYKAFDEVDGIEVAWNQMNVEDALQTPEQLERLYSEVHLLKSLKHENIIKCYHSWVDDKTRTINMITELFTSGCLRQYRKKHNNVDLKAIKNW ARQILKGLNYLHSHNPPIIHRDLKCDNVFVNGHTGEVKIGDLGLAAIMQQPTARSVIGTPEFMAPELYDEEYTELVDIYSFGMCMLEMVTCEYPYCECRN PAQIYRKVTSGVKPASLTKVDNPQVKEFIEKCLVPAAVRLPAIELLKDPFLAAGSPKEVIPDSLQLSSLMIRQDKSLPMEIDSNSKKSSKNSCTESLNED MQFSPLEVERCTETNGFRLRGEKNTDNTISMTLRIADPCGRARIIHFTFFLESDTTITIAEEMVEQLGLPMEDVAVIAELIDSLIVKLGASRSPSLCCAT SMQNGSYGIQSSTTSKTGADDSSIQLFATGKDQENGTTMKSDITAELYFIGANQNLMPADDYAAGLDSSEISTSDFGMFDEGRVAQYPSRGSSIAISSSD MPQNLSLSSICTLSIADKEEHDELQVELAAIDMQYNMHLQELSRMREEAMENAKRKWMAKKKLAVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10000334 [exp]	0	1
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10033225 [exp]	1.7	0.8959
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10020967 [exp]	10.0	0.8460
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10034853 [exp]	17.2	0.8356
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	21.5	0.8586
AT3G59660			C2 domain-containing protein /...		Lus10027067 [exp]	25.7	0.8508
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	29.5	0.8244
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10038824 [exp]	35.0	0.8180
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	39.5	0.8223
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	46.0	0.8319
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10013349 [exp]	51.1	0.8145

Compare expression of checked genes

Lus10000334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.