Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 509 / 3e-175 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 491 / 4e-168 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 433 / 1e-145 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G17840 390 / 8e-129 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 221 / 4e-64 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT3G52310 213 / 9e-61 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT5G06530 209 / 6e-60 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT4G27420 207 / 8e-60 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT2G01320 208 / 2e-59 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT1G31770 202 / 8e-58 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009961 [exp] 594 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027353 [exp] 536 / 0 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 432 / 5e-145 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 411 / 7e-137 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10009959 [exp] 405 / 2e-134 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 399 / 1e-132 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 394 / 1e-130 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 350 / 2e-113 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10035445 [exp] 351 / 3e-111 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051200 [exp] 536 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 532 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051300 [exp] 481 / 5e-164 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 471 / 2e-160 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056600 [exp] 405 / 7e-135 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 399 / 1e-132 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 399 / 2e-132 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 395 / 2e-130 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051300 [exp] 302 / 3e-95 AT1G17840 611 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G311300 [exp] 295 / 2e-92 AT1G17840 617 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10000338 pacid=23149793 polypeptide=Lus10000338 locus=Lus10000338.g ID=Lus10000338.BGIv1.0 annot-version=v1.0 ATGGAGATAGAATCTGGTTCCGCTGGTAACGACTATAACGGCACCGTTTCTGGGGAGAATGATGGTGGTTTTCGGTCCTCGGATCACGGTCGAGGTATGC GCGGAACATATTTGGTGTGGGAAGATCTAACGGTTGTGTTGCCAAATTTTGGTAACAAACCAACAAAGAGGTTGCTTCAAGGGCTGAGTGGGTATGCTGA GCCAGGAAGAATCATGGCTATAATGGGTCCATCAGGTTCTGGGAAATCCACACTTCTTGATTCTCTGGCAGGTAGACTATCGAAAGACGTGATAATGACT GGAACAGTTCTGTACAATGGCAAGAAGAGAAGGGTGGATAGTGGTGTTGCATATGTGACACAAGAGGATGTACTTCTAGGAACTCTTACAGTTAGAGAAA CCTTAACGTACTCAGCAATGTTGAGGCTTCCACCTAGCCATTCAAAGCTTCCAACTAGCCACTCAAAGCAAGAAGTTTCAGATGTTGTGGAAGCAACCAT AACTGAGATGGGGCTTCAAGATTGTAGCGATACTTTAATTGGAAACTGGCATCTGAGAGGTTTAAGTGGTGGTGAGAAGAAGAGGCTTAGCATTGCACTG GAGATCCTTACGAGGCCACGCCTCTTGTTCCTTGACGAGCCAAGCAGTGGACTGGATAGTGCCTCTGCTTTCTTTGTGGTCCAGAGCCTTCGGAACATAG CCCGAGATGGGAGAACCATCATTTCTTCCATTCACCAGCCGAGTAGTGAAGTATTTGCTCTTTTTGATGACCTCTTCTTGCTTTCAAGCGGTGAGTCTGT TTACTTTGGTGAGGCTAAGAAAGCTGTGCAGTTCTTCGCTCAAGCTGGATTTCCATGCCCAAGTAAAAGGAACCCTTCTGATCACTTTCTACGTTGTATA AACTCGGACTTTGATGCTATTGCCGCTACTTTAAAAGGATCGCAGAAAATACATGATGCTCCTGCATCATCAGACCCCTTCATGAATATGGCAACGGCAG AGATTAAAGCAAGGCTGGTTGAGAAGTACAAAAGGTCCAACTATTCCAAAGAGACCAAAGCTCAGATTAAGGAGATATCAGCAATAATCTTTTACAGAGA AAGGCTAAATGGGTACTATGGGGCGGCAGTCTACATCTTGTCCAACTACCTATCTTCTTTCCCATTCTTGGCTGTCATTGCTCTTCTCTCTGGGAACATA TGCTTTCACTTGGTGAGATTTCGGCCAGGCTTTTCATACCTGGCCTACTTCTGCCTCAACATTTTTGGCTGCATTTCGGTTATAGAGAGCCTGATGATGG TTGTAGCTTCACTGGTTCCCAATTTCCTGATGGGTTTAGTCACTGGAGCAGGAATCATTGGAATCATGATGATGACTTCTGGTTTCTTCCGCTTGCTCCC TGATCTACCCAAGGTATTCTGGCGTTACCCAGTTTCATACATCAACTACGGCGCTTGGGGACTCCAGAAATGCATTTTGAGTTCTTGA
AA sequence Show only first row Show all	>Lus10000338 pacid=23149793 polypeptide=Lus10000338 locus=Lus10000338.g ID=Lus10000338.BGIv1.0 annot-version=v1.0 MEIESGSAGNDYNGTVSGENDGGFRSSDHGRGMRGTYLVWEDLTVVLPNFGNKPTKRLLQGLSGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSKDVIMT GTVLYNGKKRRVDSGVAYVTQEDVLLGTLTVRETLTYSAMLRLPPSHSKLPTSHSKQEVSDVVEATITEMGLQDCSDTLIGNWHLRGLSGGEKKRLSIAL EILTRPRLLFLDEPSSGLDSASAFFVVQSLRNIARDGRTIISSIHQPSSEVFALFDDLFLLSSGESVYFGEAKKAVQFFAQAGFPCPSKRNPSDHFLRCI NSDFDAIAATLKGSQKIHDAPASSDPFMNMATAEIKARLVEKYKRSNYSKETKAQIKEISAIIFYRERLNGYYGAAVYILSNYLSSFPFLAVIALLSGNI CFHLVRFRPGFSYLAYFCLNIFGCISVIESLMMVVASLVPNFLMGLVTGAGIIGIMMMTSGFFRLLPDLPKVFWRYPVSYINYGAWGLQKCILSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10000338 [exp]	0	1
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10004571 [exp]	2.4	0.8797
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	3.7	0.8774
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	4.9	0.8771
AT3G11210			SGNH hydrolase-type esterase s...		Lus10028290 [exp]	6.5	0.8147
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002501 [exp]	7.2	0.8532
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008897 [exp]	8.4	0.8126
AT1G11340			S-locus lectin protein kinase ...		Lus10006746 [exp]	11.5	0.7861
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007658 [exp]	14.4	0.8104
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	14.7	0.8151
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10001934 [exp]	17.0	0.7730

Compare expression of checked genes

Lus10000338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.