Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 822 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51460 782 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G51500 768 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G17840 588 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 345 / 7e-109 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G01320 241 / 5e-70 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G55090 228 / 2e-65 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G55110 226 / 2e-64 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55100 222 / 2e-63 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G52310 223 / 7e-63 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009960 [exp] 1169 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 1020 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 905 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027353 [exp] 816 / 0 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 743 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 553 / 0 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10035445 [exp] 545 / 0 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 538 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10023154 [exp] 479 / 4e-161 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051300 [exp] 931 / 0 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 896 / 0 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 832 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 828 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056600 [exp] 671 / 0 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 648 / 0 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 608 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 607 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 536 / 0 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 533 / 0 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10000339 pacid=23149792 polypeptide=Lus10000339 locus=Lus10000339.g ID=Lus10000339.BGIv1.0 annot-version=v1.0 ATGGAAATTGAGCAAGTTGTGGATATTGATGTCGAAGCTTGTACTAGAAGCAACCATGTTGAGAGTGGTGAATCAAAAGGCAGAGATGAAGTGGAAGCTG CTGCATACCTTGTGTGGGAAGATTTGACAGTGGTGCTTCCAAATTTTGGCGATGAACCTACAAGGAAATTGCTTTATAGGCTCAATGGATTTGCTGAGCC TGGTAGGATCAAAGCTGTCATGGGTCCATCCGGCTCTGGGAAAACAACTCTTCTGGATACATTAGCAGGTAGACTACCAGGGAATGCCGTCATGACCGGG AATATCCTGCTTAATGGAAAGAAGAAGAGACTCGGTTCTGGTGGTGTAGGTTATGTAAGACAAGAAAATACTCTACTGGGAACTCTGACTGTGAGAGAAA CTATCAAATACTCAGCTTGTTTGAGGCTCCCAAGCACAATGACCAAGGAACAAATTGATCAGATTGCCGAAGGAACTTTAATGGAAATGGGTCTCCAAGA TTGTGCAGATCGATTTATTGGGAACTGGCATTTAAGGGGAATAAGTGGTGGGGAGAAGAAAAGGCTAAGCATTGCACTTGAAATTCTCACCAAGCCTCAG CTCTTATTCCTAGATGAACCTACAACCGGTCTACACAGCGCCTCGGCTTTCTTTGTGGTTCAAACTCTCAGAAACATTGCAGTAGATGGAAGAACTGTCA TAGGTTCCATTCATCAGCCAAGCAGTGAAGTTTTTGCACTTTTTGATGAACTTCATTTGCTTTCTGGTGGTGAGACTGTCTACTCAGGGGAGGCTAGAAG GGCAACAGAGTTCTTTTCTCAAGCTGGATTCCCTTGTCCGATCCGAAGAAACCCTTCTGATCATTTCCTACGTTGCATTAATTCGGATTTCGACCAGATC ACCCTGCCTTTAACAGGATCTAAAAGGAAAGGAACAGTTTTAAAGAGAAGAATGAAACGGCCAGTGACTTGGTGGAAGCAACTCTGCACATTGACACAGA GATCGTTTATGAACATGTGCAGAGACTTGGGTTATTATTGGGTCAGGATAGGAATCTATATAACCTTGTCCGTCTGTGTTGGTACCATCTTTTTTTATCT GGAGAAAAGTAGCTCACTCTTGGCAAGAGGAGCCTGTGCCGGATTCATTTCCGGGTTTATGACATTCATGTCAATTGGGGGCTTCCCTTCTTTCATTGAA GAATTGAAGGTTTTCCATGAAGAAAGACTGAACAGGCATTATGGGGTTGGGCTGTACATTCTATCAAACTTCCTCTCTTCATTCCCTTACTTGAAACTCA TGTCACTCTCCACTGCAAGTATTACCTTTTACAAGGTGAAACCCCGAGGAGGTTGTTTCTCGTGTTTTGTGTTCATCTGTCTCGACCTTCTAAGCAGTAT TGCAGCCGTAGAGAGCTGCATGATAACTATAGCTACACTTGTTCCCAACTACTTAATGGGAATCGTTACTGGAGCCGGATATATTGGAATCCTTATGATG ACTTCAGGATTCTTCCGTTTTCTGCCTGATCTTCCTAAGGTTCTGTGGCGCTACCCAATCTCTTACATCAACTTTGCTGTTTGGGGACTACAGGGATCCT ACAAAAACGACATGATTGGGATGGAATTTGAACCATTAATACCTGGTGGGTCGAAGTTGAAAGGCGAAGTTTTCCTGACAACGGTACTTGGTGTCAACCT TGAATATTCAAAGTGGTGGGACTTAGCTGCAGTTGTGGCCCTCCTTGTAGCTTTCAGACTTCTCTTCTATGGCATCTTGAAGTTAAAGGAGAGATCTTCA CCTGTGTTAAGGGAGATTTATACCAAGAGAACGCTGCATCATCTCAAGAAGAGGCCATCTTTTAGGAAGAACTCGCCTTTTCCTTCTCAGAGGCATCAAG TCATTCCTTCTCTGTCTTCTCAAGAGGGTCTATTGTCTCCCATCCACTAG
AA sequence Show only first row Show all	>Lus10000339 pacid=23149792 polypeptide=Lus10000339 locus=Lus10000339.g ID=Lus10000339.BGIv1.0 annot-version=v1.0 MEIEQVVDIDVEACTRSNHVESGESKGRDEVEAAAYLVWEDLTVVLPNFGDEPTRKLLYRLNGFAEPGRIKAVMGPSGSGKTTLLDTLAGRLPGNAVMTG NILLNGKKKRLGSGGVGYVRQENTLLGTLTVRETIKYSACLRLPSTMTKEQIDQIAEGTLMEMGLQDCADRFIGNWHLRGISGGEKKRLSIALEILTKPQ LLFLDEPTTGLHSASAFFVVQTLRNIAVDGRTVIGSIHQPSSEVFALFDELHLLSGGETVYSGEARRATEFFSQAGFPCPIRRNPSDHFLRCINSDFDQI TLPLTGSKRKGTVLKRRMKRPVTWWKQLCTLTQRSFMNMCRDLGYYWVRIGIYITLSVCVGTIFFYLEKSSSLLARGACAGFISGFMTFMSIGGFPSFIE ELKVFHEERLNRHYGVGLYILSNFLSSFPYLKLMSLSTASITFYKVKPRGGCFSCFVFICLDLLSSIAAVESCMITIATLVPNYLMGIVTGAGYIGILMM TSGFFRFLPDLPKVLWRYPISYINFAVWGLQGSYKNDMIGMEFEPLIPGGSKLKGEVFLTTVLGVNLEYSKWWDLAAVVALLVAFRLLFYGILKLKERSS PVLREIYTKRTLHHLKKRPSFRKNSPFPSQRHQVIPSLSSQEGLLSPIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	0	1
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10004008 [exp]	1.0	0.9911
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10039736 [exp]	2.4	0.9759
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10034329 [exp]	4.2	0.9697
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	4.5	0.9714
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	5.5	0.9736
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	6.9	0.9715
AT3G63480			ATP binding microtubule motor ...		Lus10035343 [exp]	7.5	0.9606
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	9.2	0.9626
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	9.5	0.9713
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10040150 [exp]	10.2	0.9546

Compare expression of checked genes

Lus10000339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.