Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08800 569 / 0 SIEL SHORT-ROOT interacting embryonic lethal, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012221 [exp] 1415 / 0 AT3G08800 607 / 0.0 SHORT-ROOT interacting embryonic lethal, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G127500 [exp] 818 / 0 AT3G08800 612 / 0.0 SHORT-ROOT interacting embryonic lethal, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000343 pacid=23142319 polypeptide=Lus10000343 locus=Lus10000343.g ID=Lus10000343.BGIv1.0 annot-version=v1.0 ATGGAGCATCAGCTATGGAGCTTGTGTGAACGCTCTATCGAAGCTGACGAGCCTTCATGTTGCCACTCTATGGCTTCCATGAGCTCGCTTATCGTCAATC CTCACACCTCCACTTCCACAATCTCGTCCATCCTCGAGACCTTAGCTCGTTCTCTTAAGCGCGGCGACGATTCGGCCTCCTTCCATCAAGCTCTCAAGCT GCTAGCTGATATCGCCTCGCTCCGTCCTCATCTCTCCCGCGCTGTAGTTGACGGCCTCCTTTCCAGCTTCTACTCGCGGCTCTCCACCGCCGAGTCGCCC GCATTTGTTTCCGAGATACTGGCCACTCTCACTTCGCTGTCAGCTAAGGACGGGAGTTCAGTTGTCGAGCTCGACGATCAGCTGTTTGTTTCGTTGTGCT TTGTTCCGTCGGTCTCCATGCGATTGACACTTCTCAGGAATGCGGAGAGGTTCGGCATAAGAGCGTCAGTTTTGTTTACTGTGTTCTTCGGTTTCACGAA GGATCCTTATCCTTACGTGAGAAAAGCTGCATTGGATGGCTTAGCTAATTTATCGAAATACGATGATTTTGAGGATATTGGCTTGATCGAAGGATGCTAC AGTAGAGCTGTTGAGCTTCTGCGGGACGCTGAGGATTGTGTACGTTCTGCAGCAGTTCGCGTGGTTGCCGGGTGGGGTCAAATGCTCATAGAAGCTCTTG AAGAGAAGGATAAAAGAGATTGGTCGAATTTAGTATTTATTCAGCTATGTTCTGTAGTTAGAGATATGAGTCTAGAGGTCAGAGTTGAAGTTTTTAATGC GCTTGGAAAGGTAAAATTGGTGTCTGAGGATATTTTGTTACAAAGTCTGTCCAAGAAGGTAACAGGAGCATTGAAAGAGAAGATATCTCAAGCTCAAAGC AGTAAAAGCGTTTTTCAAATGTTCGTTTCGCATGGTGCAGGAGCTTTTCTGCACGGGCTTGAGGATGAATTCCACCAGGTGCGAAAGTCTGCTTGCTGCT CATTGCTTAAGCTGGTCATCCTCTCCGATAAGTTTGCCGAGCAGGCCTTGAATCTGTTAATGGACATGCTGAATGATCACGCAATGGCTGTCAGGTTAGC AGCTTTGGAAACATTGCATTTTATGGCAAATCGTGATAGCCTCTATGTACAGGAAGTACACATGCACATGATACGGAGTAATCTAACAATTGAACGACTG GCTGACTTGCAGTTTCTTGGCACTCTAGCTGATAAGAGTGACATAATCAGATCTGCCGCCAGGAAAATTTTCAGGGTCGTGAAACTTTCTAAAGTGGAGC TTTTTCGAAGCACAGTCAAAAGCCTTCTCAAGAATTTGGAGGTGCATCCCAAGGAGGAAGCTGATATCTTTTCTGTCTTGTTTCACATGGGGCGAAACCA CGGCTATTTCGCTTCACAAGTTATCAAGCATGTATCTGACAAGCTGGAGCCAGTTTCTGAAGGAGAAATGAGCTTTGGTAGTGCTAAATCAGCAGCTTAC CTTGTACTTTCCATCTCAGCTCCACTTTCGTCGGATCAGAGGGAAATAAATATACCACCACAGTTATTTTCATACGCAGTCACACTTCTTGGAAGGATCT CTCTTGCTTTGGATGACATTGTGGACCGAACTACCCTGTTAATGTATTTAACCGAAAAGAGTGGATCGTCCGGTTCCATTGCACAATTGATCGTAGAGGA GTCTTCATTATCTCCTCTTGACCATGTTGAGTCTAATCTCGAGGATGGGAAAGGTAGCAGTCCTACTGGAAATTGGATTTCGAGTGGTAACATAACACCG GGATTCACATTATCCCGTCAAAATGGTGATGACATCCTGAAATGCATGAATCTTATACTTAAAAGAGTCCAACGTATTTGGTTGTTCGGAAAATTAAGCA GCAACGCCAAAGCAATAAGAACTATCAGTGCTTGCAAAGAAGAGGTATCTCGGTACAGGTCTACATCCGTTGAATCTGCCGGTGCATTAGCGTTTACGCT GCAATACCTCCGAGTCGTTAAGTTACTCGCCAAAATATCGTGGCATATTTTCTGCACGGCACGTTGTAACCAGACAGGGTTCTGTAGAGAAGAGGAGCTG CGAATCTTAGAGCTTGTGCTTTTTGCTTGCGTATTGAAGTTGGCGAAAGCCGACTTCTTCTGCTACTGGGCTACCGCTCTGAAAAGGTTATTTATTACAA TCTCTAACGTAAAATCTCTCATTCGGGATGAATCTGTTGAATCGTCGAGCTTTATAGGTGAAGTTAAGCTAGCGTTAAACCAGGTTGGTGGGAACCTCAT CACGCCACTCTTGTTCAGAAAGTTGGCCCATACCTTTTCGCTCAGGCAGTTCACTTTATGTAGTCGAATCACTCACATCAGAGCCGAACTGGATGTCCCT GGTAATGATTCAGAGAATCCTCTTCCGTTTGTTGCGGGATTGCCTGTTGCGATCCCGTTAGAGATCGTTTTGCACAATGTGTCGAGTGGTAATAGACTGT GGTTGAGAATTTTTACAGCGGAGGGACGGTTAACTCAGTTTATGTTCTTAGATCATCAAAGTCTACAAGTGTTCTCCGATGGGGCAATGAAGATCCTCAT GTTTGCCCCGTTTTACAGAACCCCGAATGCTGGTACATTCAACTTGAGAGTTTGTGTTGGTATGGAATGTACGTTTGAAGATGTTCAGGTAATTCGAGGA CGCGGAGGTCCAAAACACGCATTAGCGTATATTTCCGAGGAAAAAGAAGTTTACCTCTCCAGAGTTTCGAGAGAGAAGTAA
AA sequence Show only first row Show all	>Lus10000343 pacid=23142319 polypeptide=Lus10000343 locus=Lus10000343.g ID=Lus10000343.BGIv1.0 annot-version=v1.0 MEHQLWSLCERSIEADEPSCCHSMASMSSLIVNPHTSTSTISSILETLARSLKRGDDSASFHQALKLLADIASLRPHLSRAVVDGLLSSFYSRLSTAESP AFVSEILATLTSLSAKDGSSVVELDDQLFVSLCFVPSVSMRLTLLRNAERFGIRASVLFTVFFGFTKDPYPYVRKAALDGLANLSKYDDFEDIGLIEGCY SRAVELLRDAEDCVRSAAVRVVAGWGQMLIEALEEKDKRDWSNLVFIQLCSVVRDMSLEVRVEVFNALGKVKLVSEDILLQSLSKKVTGALKEKISQAQS SKSVFQMFVSHGAGAFLHGLEDEFHQVRKSACCSLLKLVILSDKFAEQALNLLMDMLNDHAMAVRLAALETLHFMANRDSLYVQEVHMHMIRSNLTIERL ADLQFLGTLADKSDIIRSAARKIFRVVKLSKVELFRSTVKSLLKNLEVHPKEEADIFSVLFHMGRNHGYFASQVIKHVSDKLEPVSEGEMSFGSAKSAAY LVLSISAPLSSDQREINIPPQLFSYAVTLLGRISLALDDIVDRTTLLMYLTEKSGSSGSIAQLIVEESSLSPLDHVESNLEDGKGSSPTGNWISSGNITP GFTLSRQNGDDILKCMNLILKRVQRIWLFGKLSSNAKAIRTISACKEEVSRYRSTSVESAGALAFTLQYLRVVKLLAKISWHIFCTARCNQTGFCREEEL RILELVLFACVLKLAKADFFCYWATALKRLFITISNVKSLIRDESVESSSFIGEVKLALNQVGGNLITPLLFRKLAHTFSLRQFTLCSRITHIRAELDVP GNDSENPLPFVAGLPVAIPLEIVLHNVSSGNRLWLRIFTAEGRLTQFMFLDHQSLQVFSDGAMKILMFAPFYRTPNAGTFNLRVCVGMECTFEDVQVIRG RGGPKHALAYISEEKEVYLSRVSREK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10000343 [exp]	0	1
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	4.9	0.8253
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	10.2	0.7999
AT2G24395			chaperone protein dnaJ-related...		Lus10026979 [exp]	10.2	0.7816
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10042748 [exp]	10.7	0.7437
AT1G55140			Ribonuclease III family protei...		Lus10015626 [exp]	14.7	0.7659
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10003690 [exp]	24.2	0.7706
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	24.3	0.7661
					Lus10006129 [exp]	25.5	0.7804
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10034149 [exp]	25.7	0.7758
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10002107 [exp]	32.9	0.7783

Compare expression of checked genes

Lus10000343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.