Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01650 51 / 8e-09 Tautomerase/MIF superfamily protein (.1.2) AT5G57170 44 / 4e-06 Tautomerase/MIF superfamily protein (.1.2) AT3G51660 40 / 8e-05 Tautomerase/MIF superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012223 [exp] 68 / 3e-15 AT5G01650 146 / 9e-47 Tautomerase/MIF superfamily protein (.1.2) Lus10001710 [exp] 61 / 2e-11 AT3G28720 149 / 4e-41 unknown protein Lus10022681 [exp] 55 / 7e-10 AT5G01650 172 / 8e-57 Tautomerase/MIF superfamily protein (.1.2) Lus10014233 [exp] 52 / 8e-09 AT5G01650 169 / 1e-55 Tautomerase/MIF superfamily protein (.1.2) Lus10024539 [exp] 53 / 2e-08 ND 51 / 4e-07 Lus10033020 [exp] 52 / 3e-08 AT3G28720 599 / 0.0 unknown protein Lus10033324 [exp] 47 / 9e-07 AT5G57170 119 / 1e-35 Tautomerase/MIF superfamily protein (.1.2) Lus10034783 [exp] 44 / 1e-05 AT5G57170 116 / 4e-34 Tautomerase/MIF superfamily protein (.1.2) Lus10000344 [exp] 42 / 2e-05 AT3G51660 96 / 2e-27 Tautomerase/MIF superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126500 [exp] 55 / 3e-10 AT5G01650 193 / 2e-65 Tautomerase/MIF superfamily protein (.1.2) Potri.016G126800 [exp] 54 / 1e-09 AT5G01650 185 / 4e-62 Tautomerase/MIF superfamily protein (.1.2) Potri.006G104500 [exp] 52 / 4e-09 AT5G01650 200 / 5e-68 Tautomerase/MIF superfamily protein (.1.2) Potri.016G126600 [exp] 52 / 5e-09 AT5G01650 216 / 2e-74 Tautomerase/MIF superfamily protein (.1.2) Potri.006G104600 [exp] 48 / 1e-07 AT5G01650 180 / 3e-60 Tautomerase/MIF superfamily protein (.1.2) Potri.016G126700 [exp] 47 / 5e-07 AT5G01650 164 / 6e-54 Tautomerase/MIF superfamily protein (.1.2) Potri.006G075100 [exp] 43 / 8e-06 AT5G57170 194 / 7e-66 Tautomerase/MIF superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000345 pacid=23142320 polypeptide=Lus10000345 locus=Lus10000345.g ID=Lus10000345.BGIv1.0 annot-version=v1.0 ATGGTTGTTGTGAAGGGCTCTGTCCCGATTTTGTACGGCGGAACGGAGGAGCCAGCTGCTTATGGTGAGCTGCTCTCCATCGGCGTTCCTGACGCGACAA GAACAAAAGACTCGCCGCCGCTGTCTCGGCGATTGTTGACGAGAAGCTGTCAGTTCCTTAGACAGATTCTTCCTCAAGTTCGTCGGGACCAAGGAATTGA GAGGAGGGAGGAACAGAGAGGGGCTGGGGTGGAGGAGATGGCTGATTTGATGGCATCAGAGAGACGAGATGCGAAGGAAGGAGGGGAGTGGGAGACGTCG AGGAGAGTGATGACGTGGAAGTGGTCGGAGGTGTGGGTGGAGGAAAAGAAGGAGGAGAGGATGTCGACGGTGGAGTCAGCGGAGGGGAAGGCGGAGCCGA CGAGGCGGAGATGGATAGAGAGAGGGAGGGAGAGGGATAGGAGAAGAGGGAGGGGAAGGGATAGGAGGGAGGAGATCAAGGAGGGGCGCAAATCTCAATG A
AA sequence Show only first row Show all	>Lus10000345 pacid=23142320 polypeptide=Lus10000345 locus=Lus10000345.g ID=Lus10000345.BGIv1.0 annot-version=v1.0 MVVVKGSVPILYGGTEEPAAYGELLSIGVPDATRTKDSPPLSRRLLTRSCQFLRQILPQVRRDQGIERREEQRGAGVEEMADLMASERRDAKEGGEWETS RRVMTWKWSEVWVEEKKEERMSTVESAEGKAEPTRRRWIERGRERDRRRGRGRDRREEIKEGRKSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10000345 [exp]	0	1
					Lus10022721 [exp]	7.5	0.7909
AT4G33985			Protein of unknown function (D...		Lus10019852 [exp]	10.4	0.7542
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	14.0	0.7784
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	18.7	0.7775
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	25.1	0.7472
AT1G03230			Eukaryotic aspartyl protease f...		Lus10000080 [exp]	25.2	0.7428
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Lus10024065 [exp]	26.2	0.7408
					Lus10034979 [exp]	27.7	0.7711
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	29.0	0.7446
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	33.3	0.7584

Compare expression of checked genes

Lus10000345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.