Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 394 / 5e-137 Peroxidase superfamily protein (.1) AT5G58400 359 / 3e-123 Peroxidase superfamily protein (.1) AT5G58390 350 / 6e-120 Peroxidase superfamily protein (.1) AT1G14550 300 / 8e-100 Peroxidase superfamily protein (.1) AT4G36430 297 / 7e-99 Peroxidase superfamily protein (.1) AT1G44970 297 / 2e-98 Peroxidase superfamily protein (.1) AT5G66390 296 / 3e-98 Peroxidase superfamily protein (.1) AT2G18150 296 / 4e-98 Peroxidase superfamily protein (.1) AT2G18140 295 / 1e-97 Peroxidase superfamily protein (.1) AT3G50990 292 / 1e-96 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006534 [exp] 620 / 0 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10032786 [exp] 422 / 4e-148 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 416 / 6e-146 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10034207 [exp] 405 / 4e-141 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10009936 [exp] 359 / 3e-123 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10008581 [exp] 358 / 8e-123 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10025255 [exp] 353 / 1e-120 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10006535 [exp] 352 / 6e-120 AT5G05340 241 / 1e-77 Peroxidase superfamily protein (.1) Lus10030148 [exp] 346 / 1e-118 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143200 [exp] 448 / 2e-158 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 409 / 5e-143 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 387 / 6e-134 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 371 / 5e-128 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 369 / 4e-127 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.016G132700 [exp] 364 / 2e-125 AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 358 / 4e-122 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 355 / 2e-121 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.013G156800 [exp] 351 / 5e-120 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 351 / 6e-120 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10000346 pacid=23156071 polypeptide=Lus10000346 locus=Lus10000346.g ID=Lus10000346.BGIv1.0 annot-version=v1.0 ATGGCTTATTCCTCTGTCAAGTCCTTGTTTGTAACCCTCTTCATTATTGGGTCGTCTGTGCTAGTTTCAACCAGTAACGCCCAACTCGCTGGGAACTTCT ACGCTCGAACATGCCCTAACGTTCAGGGCATAGTTAATCGTGTAATGAGGGAAGCTGTTAATAGAGAGCCCCGTCTCGGTGCATCTATCCTTCGCTTGTT CTTTCACGATTGTTTCGTCAATGGATGTGACGGGTCTATTTTGCTAGACGATACGTCCTCATTTACAGGGGAGAAGAATGCGAATCCTAATCGGAACTCA GTTCGAGGGTTTGAGGTCATTGACACCATCAAAACCAGAGTTGAAAGTGCTTGCAATGCTACTGTTTCTTGTGCAGATCTACTTGCAATTGCTGCTAGGG ACGGTGTCGTATTGCTTGGTGGGCCATCGTGGCAAGTCCTACTGGGCCGGAGGGACGCAAGAACAGCCAGCCAAAGCGACGCCAACAATGACCTCCCCTC CCCATTCTCCGACCTTCCAGCCCTAATCTCATCCTTTACCAACAAGGGCCTAACCGCCGCCGACATGACCGTCCTCTCCGGCGGCCACACCATCGGCCAA GCCAGGTGCACCACTTTCCGCAACCGAATCTACAACGAGACCAACATCGGGCCTAACTTTGCCGCCAACAGAAGGGCCAACTGCCCCTCTACTGCCGGCA CGGGCGACGGGAACTTGGCCCCACTCGACTTGTCTCCGAACAGATTCGACAATGCTTATTACAGGGAGCTTGTGGGCCAACGTGGGCTACTTCATTCCGA CCAACAGCTGTTCAGCGGTGGGTCCCAGGATGCTTTGGTCAGGACTTATAGTACGAATGTCAATGCGTTTGCTAGGGATTTTGCAAATGCCATGATTAGG ATGGGGAGCCTTAGTCCTCTCACTGGGAGTAATGGCGAGATTAGGCGGTTTGTGAATGGCAAGTTCTGCAAGGATCCCATGCAGGCTAATGCGGATGACA TCTCCTTCAATGGACTCAACGTCCCCAGAAACACATCCTCCAACAAAATGGGTTCGAACGTCATTTTTCTCAATATCGACAAGATTCCAAGGCTCAACAC CTTAGGAATCTCCTTAGCTCGTCTCCACTACGCTCCCCACAGAGGGCTCAACCCACCCCACACCCACACTCGTGACACTGAGATTTTGGTTGTCATTTAG
AA sequence Show only first row Show all	>Lus10000346 pacid=23156071 polypeptide=Lus10000346 locus=Lus10000346.g ID=Lus10000346.BGIv1.0 annot-version=v1.0 MAYSSVKSLFVTLFIIGSSVLVSTSNAQLAGNFYARTCPNVQGIVNRVMREAVNREPRLGASILRLFFHDCFVNGCDGSILLDDTSSFTGEKNANPNRNS VRGFEVIDTIKTRVESACNATVSCADLLAIAARDGVVLLGGPSWQVLLGRRDARTASQSDANNDLPSPFSDLPALISSFTNKGLTAADMTVLSGGHTIGQ ARCTTFRNRIYNETNIGPNFAANRRANCPSTAGTGDGNLAPLDLSPNRFDNAYYRELVGQRGLLHSDQQLFSGGSQDALVRTYSTNVNAFARDFANAMIR MGSLSPLTGSNGEIRRFVNGKFCKDPMQANADDISFNGLNVPRNTSSNKMGSNVIFLNIDKIPRLNTLGISLARLHYAPHRGLNPPHTHTRDTEILVVI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10000346 [exp]	0	1
AT5G52410			unknown protein		Lus10026416 [exp]	2.4	0.8720
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10013304 [exp]	4.0	0.8869
AT3G47570			Leucine-rich repeat protein ki...		Lus10010199 [exp]	6.2	0.8894
AT5G18560	AP2_ERF	PUCHI	Integrase-type DNA-binding sup...		Lus10033963 [exp]	14.4	0.7855
AT5G40240			nodulin MtN21 /EamA-like trans...		Lus10039481 [exp]	18.2	0.8665
AT5G05340			Peroxidase superfamily protein...		Lus10006534 [exp]	19.3	0.8205
AT5G35370			S-locus lectin protein kinase ...		Lus10025617 [exp]	22.1	0.8535
AT1G22990		HIPP22	heavy metal associated isopren...		Lus10036004 [exp]	24.5	0.8079
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10038933 [exp]	29.6	0.7805
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10007034 [exp]	31.5	0.8521

Compare expression of checked genes

Lus10000346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.