Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32530 264 / 3e-91 ATPase, F0/V0 complex, subunit C protein (.1.2) AT2G25610 259 / 2e-89 ATPase, F0/V0 complex, subunit C protein (.1) AT1G19910 66 / 7e-14 AVA-2PE, ATVHA-C2, AVA-P2 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) AT4G34720 66 / 8e-14 ATVHA-C1, AVA-P1 VACUOLAR H+-PUMPING ATPASE C1, ATPase, F0/V0 complex, subunit C protein (.1) AT4G38920 66 / 8e-14 AVA-P3, ATVHA-C3 vacuolar-type H\(+\)-ATPase C3, vacuolar-type H\(+\)-ATPase C3, vacuolar-type H(+)-ATPase C3 (.1) AT2G16510 66 / 8e-14 AVA-P1 ATPase, F0/V0 complex, subunit C protein (.1) AT1G75630 66 / 8e-14 AVA-P4, AVA-P vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4, vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 (.1), vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000694 [exp] 293 / 6e-103 AT4G32530 312 / 3e-110 ATPase, F0/V0 complex, subunit C protein (.1.2) Lus10033179 [exp] 66 / 9e-14 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10028367 [exp] 66 / 9e-14 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10028370 [exp] 66 / 9e-14 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10041819 [exp] 66 / 9e-14 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10010618 [exp] 66 / 9e-14 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10010623 [exp] 66 / 1e-13 AT1G19910 315 / 6e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10010619 [exp] 66 / 1e-13 AT1G19910 315 / 5e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G248700 [exp] 266 / 3e-92 AT4G32530 281 / 3e-98 ATPase, F0/V0 complex, subunit C protein (.1.2) Potri.018G032600 [exp] 265 / 5e-92 AT2G25610 249 / 8e-86 ATPase, F0/V0 complex, subunit C protein (.1) Potri.002G027200 [exp] 66 / 7e-14 AT1G19910 226 / 9e-77 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.004G163400 [exp] 66 / 8e-14 AT4G34720 224 / 4e-76 VACUOLAR H+-PUMPING ATPASE C1, ATPase, F0/V0 complex, subunit C protein (.1) Potri.007G014600 [exp] 66 / 8e-14 AT1G19910 224 / 5e-76 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.005G235300 [exp] 66 / 9e-14 AT1G19910 225 / 2e-76 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.002G082700 [exp] 66 / 1e-13 AT1G19910 221 / 9e-75 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.009G125000 [exp] 66 / 1e-13 AT4G34720 226 / 4e-76 VACUOLAR H+-PUMPING ATPASE C1, ATPase, F0/V0 complex, subunit C protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00137 [flax] [poplar] ATP-synt_C ATP synthase subunit C
Representative CDS sequence Show only first row Show all	>Lus10000347 pacid=23174294 polypeptide=Lus10000347 locus=Lus10000347.g ID=Lus10000347.BGIv1.0 annot-version=v1.0 ATGTCGAGTGCGTTAATTGTTGGAGATACGGGCTCCTGGGCTCGAGCTCTCGTTAGGATCTCTCCTTACACCTTCTCAGCCATCGGGATCGCCATCTCAA TCGGAGTCTCTGTCCTCGGCGCCGCCTGGGGGATTTACATCACCGGTAGTAGTTTGATTGGAGCTGCAATCAAAGCTCCTCGGATCACCTCTAAGAATCT CATCAGTGTAATTTTTTGTGAAGCTGTCGCCATATATGGTGTTATTGTTGCAATTATCCTGCAAACGAAGTTGGAGAGTGTTCCTGCATCACAGATATAT GATCCTGAATCTCTGAGAGCTGGATACGCGATTTTTGCATCTGGGATTATTGTTGGCTTTGCTAATCTTGTTTGCGGGCTGTGTGTGGGAATAATAGGAA GCAGCTGCGCACTGTCTGATGCCCAGAACTCGTCGCTATTTGTGAAGATTTTAGTGATTGAGATATTCGGTAGTGCTCTTGGACTGTTTGGAGTGATTGT GGGGATAATCATGTCTGCTCAAGCATCATGGCCTTCCAAAGGGTAA
AA sequence Show only first row Show all	>Lus10000347 pacid=23174294 polypeptide=Lus10000347 locus=Lus10000347.g ID=Lus10000347.BGIv1.0 annot-version=v1.0 MSSALIVGDTGSWARALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIY DPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPSKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000347 [exp]	0	1
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10001986 [exp]	1.0	0.8831
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10036916 [exp]	2.0	0.8240
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10034442 [exp]	2.8	0.8081
AT4G16444			unknown protein		Lus10016696 [exp]	4.1	0.7511
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10031990 [exp]	9.2	0.7824
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	9.5	0.8204
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10026435 [exp]	10.6	0.7511
AT4G23710		VAG2 ,VATG2 ,VH...	vacuolar ATP synthase subunit ...		Lus10021301 [exp]	11.8	0.7658
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10024418 [exp]	12.4	0.7997
AT4G29350		PRF2, PFN2, PRO...	profilin 2 (.1)		Lus10012936 [exp]	13.0	0.7720

Compare expression of checked genes

Lus10000347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.