Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012727 [exp] 150 / 2e-39 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10036646 [exp] 86 / 8e-19 ND 37 / 0.010 Lus10037287 [exp] 77 / 4e-16 AT1G31790 83 / 2e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000488 [exp] 66 / 5e-12 ND / Lus10015596 [exp] 61 / 9e-11 ND 41 / 2e-04 Lus10034050 [exp] 54 / 3e-08 ND / Lus10032852 [exp] 51 / 8e-07 AT3G09510 62 / 2e-10 Ribonuclease H-like superfamily protein (.1) Lus10025268 [exp] 46 / 1e-05 ND / Lus10041342 [exp] 47 / 2e-05 AT5G65005 44 / 6e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000349 pacid=23180904 polypeptide=Lus10000349 locus=Lus10000349.g ID=Lus10000349.BGIv1.0 annot-version=v1.0 ATGGAAGAACAAAGGTGTCTCAAGGGGAAAGAGATCAAGCTTGACACCGGAGCAGTTGTGGCGCTCACCGTAGAAGGCGAATCTGATCTCTCTCCTCCTG GGTTCTCTAGGCGACAGCCCCAAGAAACATTGAGGAAAGAGAATGTCTTCAACTACTCAACGGCTCTTATGCCCGTTGGGACTCTTTCCCCAATGCAAAC TCCTCTAACCCATATGTCGATGGAAGAGAGACAATTCTTTGTACCTGCTATAGAAGATTTTTTCCCTGGATTATCAAGAGAGATGGCGCTGGAATCGATT CCCCCTAAAAATCTAGAAACCTCCACGGGAGAACTCTCGGTGACGCCGCCTCTTACCAAGTTGAAGATAAAGAGTGGGCCTGAAGGAAACAAAGAGGTCC AAAATGCCTTTGTCCAACAAATGCTGTCCTACGGGTTCATTTTAGGCCCAGACTCAGGTGGCATTAATATTGATCTGAATGGGCATTTTAATTCCTGCGA ACCAGGCTTGGAATTTCAAAATTCCTCTAAAAAAAGGAAGTCAGACTTTGGTTCTGTCTTCTCTGCCAAAGGGAACAAGTTCTCTCCCACCACTTTGAAT TATTCCTCAAAGAGTAATCGTAAAAATAGCATTTGCTCAAGGAAGAACTGTAAGGGCACAACTTCAGTTGTGTTTCCTTCTGTTGTGTTTCCGCAGATTA CGGAGTTTGCGGAATGGTTATTTGCTCTAAAAGGTTGGATGAGGACGTTGTTGACCAAGGTCGCATTTTGCAGCTGGAATATATGGAAAGCACGGAATGT GTTTGTGTTTAATAATATCCGTCCTAATTGCGTTCGTACGGAAAACTTATGCAGCATGGATGTTTCTAAGTGGGAAGCTTGCAATGTTCTGCCTCATCAG TCCACTAGTGGTCTCTTTACTCCACCTCATTCTATGCCTAATCCCCCGCCAAGCATTCACCAACTTACGGCAGCTTATGGTGTCATCATTTTTGATGCCC ACGGAGTAGTTCTTGATGGGAAAGCGGCCACGTTCCTCTGTTCCTCTCCATTCACTATCGAAGCTAAAGTTGTCCTGGTTGCAGTCGAAGCCGCCTCTTC CTTTAGCTCACCCGTCATGATTTTGTTTGACTGCCTATCACTCGTCCGTCTGCTGAATGGTGATAAGGCTTTCTTCCATTGGGAGGGTGCAGCAATTACG GCTTCAATCGCGCTTGCCTTATGTGCTAATCTGCATATTGATATTCGGTTCATTCATCGGAAGAACAACGCTCCAGCGGATTGGGTAGCGCGTAATGCGT CTGCGGGCTCTTTACCGGAGAATCGGATTGATAGAATTTCATCCTCTCGGATGTGA
AA sequence Show only first row Show all	>Lus10000349 pacid=23180904 polypeptide=Lus10000349 locus=Lus10000349.g ID=Lus10000349.BGIv1.0 annot-version=v1.0 MEEQRCLKGKEIKLDTGAVVALTVEGESDLSPPGFSRRQPQETLRKENVFNYSTALMPVGTLSPMQTPLTHMSMEERQFFVPAIEDFFPGLSREMALESI PPKNLETSTGELSVTPPLTKLKIKSGPEGNKEVQNAFVQQMLSYGFILGPDSGGINIDLNGHFNSCEPGLEFQNSSKKRKSDFGSVFSAKGNKFSPTTLN YSSKSNRKNSICSRKNCKGTTSVVFPSVVFPQITEFAEWLFALKGWMRTLLTKVAFCSWNIWKARNVFVFNNIRPNCVRTENLCSMDVSKWEACNVLPHQ STSGLFTPPHSMPNPPPSIHQLTAAYGVIIFDAHGVVLDGKAATFLCSSPFTIEAKVVLVAVEAASSFSSPVMILFDCLSLVRLLNGDKAFFHWEGAAIT ASIALALCANLHIDIRFIHRKNNAPADWVARNASAGSLPENRIDRISSSRM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09510			Ribonuclease H-like superfamil...		Lus10000349 [exp]	0	1
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10023295 [exp]	1.7	0.9522
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013915 [exp]	2.0	0.9262
					Lus10030319 [exp]	3.9	0.8845
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	8.4	0.8937
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10041654 [exp]	12.1	0.8756
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	12.4	0.9124
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Lus10029912 [exp]	12.4	0.9218
AT5G11550			ARM repeat superfamily protein...		Lus10011691 [exp]	13.1	0.9139
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10011334 [exp]	15.5	0.9050
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	19.5	0.8771

Compare expression of checked genes

Lus10000349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.