Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000350 pacid=23180905 polypeptide=Lus10000350 locus=Lus10000350.g ID=Lus10000350.BGIv1.0 annot-version=v1.0 ATGGAGGAGATACAAAAGGCTAAAAGAACTGAGGCTTCCTTCTTTGCGCTTTATCAGTCATGGATATTGATTAGGTGGTGCCGCTGCTTTTCCTCTATTG GCGGCTTGACCCTTCCTCCTCCGGATCGCCATGAAGTTACAGTCGTTGTGAACACCGATCCTTTTGCTTCGTTACCATCGCTGCCGCCGGGCCATGCCCG CGTCGGCTGGCCATTTGGCCCTGGGATTCTCCCCGCTTGCCCTCAAGAAGCTGGATGGTTTGCTCGACCGGCTTTTAGGCTCTTAGTACTTGTTTCATCT TCCACTCATTGA
AA sequence Show only first row Show all	>Lus10000350 pacid=23180905 polypeptide=Lus10000350 locus=Lus10000350.g ID=Lus10000350.BGIv1.0 annot-version=v1.0 MEEIQKAKRTEASFFALYQSWILIRWCRCFSSIGGLTLPPPDRHEVTVVVNTDPFASLPSLPPGHARVGWPFGPGILPACPQEAGWFARPAFRLLVLVSS STH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000350 [exp]	0	1
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10014786 [exp]	3.5	0.5910
					Lus10003030 [exp]	20.0	0.6380
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10001112 [exp]	22.8	0.4915
AT5G61000		ATRPA70D	Replication factor-A protein 1...		Lus10003025 [exp]	33.8	0.5830
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000381 [exp]	44.7	0.5504
AT2G30460			Nucleotide/sugar transporter f...		Lus10008596 [exp]	63.5	0.4673
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10027947 [exp]	67.7	0.4948
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10020790 [exp]	83.1	0.5011
AT3G14880			unknown protein		Lus10013746 [exp]	102.5	0.4946
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10003551 [exp]	125.6	0.4796

Compare expression of checked genes

Lus10000350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.