Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16890 313 / 4e-103 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT1G78870 310 / 4e-102 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT1G09320 248 / 1e-73 agenet domain-containing protein (.1) AT1G18335 241 / 1e-73 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT3G08690 156 / 2e-44 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G41700 156 / 2e-44 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT1G64230 156 / 3e-44 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 155 / 6e-44 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT4G27960 155 / 8e-44 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT2G16740 154 / 2e-43 UBC29 ubiquitin-conjugating enzyme 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000615 [exp] 661 / 0 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10017654 [exp] 315 / 6e-104 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10033611 [exp] 315 / 6e-104 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10010903 [exp] 285 / 1e-88 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1) Lus10017088 [exp] 192 / 2e-53 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10037805 [exp] 192 / 2e-53 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10031429 [exp] 175 / 9e-48 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10021385 [exp] 154 / 1e-43 AT1G64230 302 / 1e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 154 / 2e-43 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011100 [exp] 330 / 9e-107 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.012G041400 [exp] 323 / 1e-105 AT1G18335 252 / 4e-84 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.013G006900 [exp] 326 / 3e-105 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.001G392500 [exp] 309 / 1e-101 AT1G78870 310 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.011G111400 [exp] 309 / 2e-101 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.016G138900 [exp] 155 / 4e-44 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 155 / 4e-44 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 154 / 1e-43 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 154 / 1e-43 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.001G094900 [exp] 154 / 2e-43 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10000353 pacid=23175441 polypeptide=Lus10000353 locus=Lus10000353.g ID=Lus10000353.BGIv1.0 annot-version=v1.0 ATGTCCAAAGCTTCTTATTCAACGATCCCCCTTTTCAAACAGGGCGAACCAGTCGAGATCAGCTCAGACGACCCTGGTTTCCGCGGATCCTGGTTTTCTG GCACCGTCGTCCGTAGAAACAAGGAGAACCCTAACCAGTACATAGTTCAGTACGACAAGCTCTTCGAGGACGAATCTGGCCGGATCCCATTGCAAGAAAC CCTTCACTGGGTCCAATTGCGGCCTCCGCCGCCGGCTGACATGAAGAAGGTCAAGTTCAAGTTTAGCGACGAAGTGGAGGCCTTCCATAGAGACGGCTGG TGGGAAGGGGTTATTACTGAGGAGCTGGCCGATGGGAAGTTCGCGGTGTTCTTCAGGAGCTCCAAGGAGCAGATTGTGTTTGGTGACAAGGACTTGAGGT TGCAGAGGGAATGGGTTCGTGGGAAGTGGTACCCGCCTTTCGAGCAACACCTGGTAGAGAAAGATAGATCAGCAGCGAAGACCTCCAAAGTTGTTAAAGA GGAGAAGCTATCTGATGCAAGGACCAACCAAGAGCATGTTGCGAGGAAGACACCCAAAAAAGCTTTCAAGTTCAGCCTGGGAATGCAAGTTGAGGTTACT ACTGAGGAAGAAGGTTTTGACGGTGCTTGGTTTTCTGCAATCATCGTGGAAGCTTCTGGAGAGGATAAATACCTTGTTCAGTACTTGACCTTAAGAAATG AGGATGACACTGAATTTCTGAGTGAACAGATACATGCTTGGCACATAAGACCTTCTCCACCAGAGACCGTTGTCGATTCATTGAAATTAATGGAAGAAGT AGATGCTTATTATAACGAGTGTTGGTGGGTGGGCGTGATTGTGAAGGTTTTGTCCGACAGCAAGTACCTCGTCTACTTCAGGGACACTGAAGAGGAATTA GTGTTCACGCAGGGTGACTTAAGGCAACATCAAGACTGGATAGGTGGCAAATGGATCATCCCTTCGCAGATTTTAGAGAAGAAGAAGAAGATGGATAAAT TGATACAGACAGCTTATTCCGAGGACGACCATCTATCCTTTTTCCTTCCCTTCCGCCGTTTCGATAGAAATGGATTGTGCGTGGTCTTGGAGTCTGGTAG AGGCGATAAGCTTTTCGCTAGTACGAAGAAGTACATTCAGAACCTCCTCAAAGTGAATATGGAGGGTCCGTTTGGGGCTGAATGGCCTCAGGAAGAGAAG GTGAAACGTAGGGAAATGGTGTCTCCAGAAGCACGATACATATTCGTCCAGGAAGAGTCCAATGACTTTGATTATAAAGCGGTACCCCTGGTGGGGTTTG TGCATTATAGGTTTACGTTGGAAGAAGAGATACCTGTTCTTTATGTCTATGAGATTCAGCTCGAGTCTCAAGTTCAAGGGAAAGGATTGGGAAAGTTCTT GATGCAACTTGTCGAGCTTATTGCTCGCAAGAGCTGCATGAGCGCTGTAATGTTAACTGTCCAAAAAGCAAATGTTGCAGCTATGAACCTCTACACAAAC AAGATGAGATACAGTATATCAAGCATTTCACCTTCACTAGTCGATCCCTTGATGGGGGCTGAAAAGAGCTACGAGATACTATGCAAAGCATTTGATCATG AAGCCAGGGCTGCACTGGAGTTAAATACTCGTAATAACAAATTGGGAGAGGAGTTAGCTTTGCATTTGATAACACCAACGCCGTTCCTCATCTCCCTCGA CATAACACCATCCTTCAGAAACCCAACTGGCCTGCTACTACCGAAACCCATAGCCTTGCCTACTACCTACCTTTACCCCACCGATTATCTCGAACAGTTA TTCACCGGACTCCGAAGAAGAAAAGAAACCTCAATGGCGAACAGTAACCTTCCTCGGAGAATTATCAAGGAAACGCAGCGGCTGCTCAGTGAACCAGCCC CTGGAATTAGTGCTTCCCCTTCTGAAGAAAACATGCGATACTTCAATGTTATGATTCTTGGTCCAACACAATCACCTTATGAAGGTGGTGTTTTTAAGTT GGAATTGTTCTTGCCCGAAGAATACCCAATGGCACCTCCCAAGGTTCGCTTCTTGACGAAAATTTATCACCCTAATATTGACAAGCTTGGAAGAATTTGC CTTGATATTCTGAAAGATAAATGGAGCCCTGCACTCCAGATCCGAACTGTTCTGCTAAGTATCCAAGCTCTCTTGAGCGCACCAAATCCTGATGATCCTC TGTCTGAGAACATTGCAAAGCACTGGAAGTCAAATGAAGCTGAAGCTGTTGAAACAGCTAAAGAATGGAGCCGCTTATATGCAAGTGGTGCATGA
AA sequence Show only first row Show all	>Lus10000353 pacid=23175441 polypeptide=Lus10000353 locus=Lus10000353.g ID=Lus10000353.BGIv1.0 annot-version=v1.0 MSKASYSTIPLFKQGEPVEISSDDPGFRGSWFSGTVVRRNKENPNQYIVQYDKLFEDESGRIPLQETLHWVQLRPPPPADMKKVKFKFSDEVEAFHRDGW WEGVITEELADGKFAVFFRSSKEQIVFGDKDLRLQREWVRGKWYPPFEQHLVEKDRSAAKTSKVVKEEKLSDARTNQEHVARKTPKKAFKFSLGMQVEVT TEEEGFDGAWFSAIIVEASGEDKYLVQYLTLRNEDDTEFLSEQIHAWHIRPSPPETVVDSLKLMEEVDAYYNECWWVGVIVKVLSDSKYLVYFRDTEEEL VFTQGDLRQHQDWIGGKWIIPSQILEKKKKMDKLIQTAYSEDDHLSFFLPFRRFDRNGLCVVLESGRGDKLFASTKKYIQNLLKVNMEGPFGAEWPQEEK VKRREMVSPEARYIFVQEESNDFDYKAVPLVGFVHYRFTLEEEIPVLYVYEIQLESQVQGKGLGKFLMQLVELIARKSCMSAVMLTVQKANVAAMNLYTN KMRYSISSISPSLVDPLMGAEKSYEILCKAFDHEARAALELNTRNNKLGEELALHLITPTPFLISLDITPSFRNPTGLLLPKPIALPTTYLYPTDYLEQL FTGLRRRKETSMANSNLPRRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAPPKVRFLTKIYHPNIDKLGRIC LDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWSRLYASGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10000353 [exp]	0	1
AT5G65960			GTP binding (.1)		Lus10016687 [exp]	2.0	0.8856
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10020037 [exp]	4.9	0.8577
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	4.9	0.8871
AT2G36410			Family of unknown function (DU...		Lus10035563 [exp]	11.5	0.8584
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10027283 [exp]	12.2	0.8619
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10024423 [exp]	12.6	0.8667
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	12.7	0.8724
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	14.0	0.8537
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	16.4	0.8832
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	16.9	0.8844

Compare expression of checked genes

Lus10000353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.