Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56580 95 / 1e-25 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT1G09310 94 / 5e-25 Protein of unknown function, DUF538 (.1) AT5G46230 89 / 1e-23 Protein of unknown function, DUF538 (.1) AT4G24130 76 / 2e-18 Protein of unknown function, DUF538 (.1) AT1G30020 72 / 9e-17 Protein of unknown function, DUF538 (.1) AT5G49600 56 / 1e-10 Protein of unknown function, DUF538 (.1) AT3G07470 54 / 1e-09 Protein of unknown function, DUF538 (.1) AT5G19860 47 / 5e-07 Protein of unknown function, DUF538 (.1) AT3G07460 45 / 2e-06 Protein of unknown function, DUF538 (.1.2) AT4G02370 44 / 4e-06 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017655 [exp] 156 / 4e-50 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10013912 [exp] 155 / 1e-49 AT5G46230 123 / 5e-37 Protein of unknown function, DUF538 (.1) Lus10001891 [exp] 152 / 2e-48 AT5G46230 120 / 8e-36 Protein of unknown function, DUF538 (.1) Lus10000616 [exp] 132 / 8e-41 AT5G46230 86 / 1e-22 Protein of unknown function, DUF538 (.1) Lus10033613 [exp] 95 / 1e-26 AT1G56580 63 / 4e-14 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10010904 [exp] 90 / 1e-23 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10031428 [exp] 90 / 1e-23 AT1G09310 185 / 2e-60 Protein of unknown function, DUF538 (.1) Lus10017330 [exp] 83 / 8e-21 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10018630 [exp] 82 / 4e-20 AT1G09310 195 / 5e-64 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G056700 [exp] 162 / 2e-52 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 152 / 2e-48 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 139 / 2e-43 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.005G011200 [exp] 101 / 4e-28 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 99 / 3e-27 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 91 / 3e-24 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 87 / 1e-22 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.003G146400 [exp] 87 / 3e-22 AT4G24130 211 / 5e-71 Protein of unknown function, DUF538 (.1) Potri.010G149100 [exp] 65 / 1e-13 AT5G49600 152 / 3e-47 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 52 / 1e-08 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10000355 pacid=23175444 polypeptide=Lus10000355 locus=Lus10000355.g ID=Lus10000355.BGIv1.0 annot-version=v1.0 ATGGCAGCGGATCCAAAGCAAGGAGCTATAGTGAAGACGGGCCACGAAGAAGTAATGAAGATGGTGGTATCGCTCCTTGGAGAGTTCGAGCTGCCCGAAG GGCTGCTGCCGTTGGAAGCTGCAACAGAGACAGGGTACAATGAGGAAACTGGCTATTTTTGGATCGTGCAAAGAAAGGCAGTGACGCATGAGTTCAAGAT GATTAGCAAGCAGGTCAGTTACGACTCAGAGATTACTGGCTACATTGAGAAGAAGAAGGTGAAAACTCTGAAAGGTATCAAGGCCAAGGGGTTGCTATTG TGGCCTCCAGTGAACGAGATTATCGTAAATGATCCCCCGACCGGAAAAATTCACTTTAAGACCATTGGTGGTATTACCAAGACTTTCCCCGTCGAGGCTT TTGCCGCCGGCCAGTAG
AA sequence Show only first row Show all	>Lus10000355 pacid=23175444 polypeptide=Lus10000355 locus=Lus10000355.g ID=Lus10000355.BGIv1.0 annot-version=v1.0 MAADPKQGAIVKTGHEEVMKMVVSLLGEFELPEGLLPLEAATETGYNEETGYFWIVQRKAVTHEFKMISKQVSYDSEITGYIEKKKVKTLKGIKAKGLLL WPPVNEIIVNDPPTGKIHFKTIGGITKTFPVEAFAAGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46230			Protein of unknown function, D...		Lus10000355 [exp]	0	1
AT4G32090			Beta-1,3-N-Acetylglucosaminylt...		Lus10012177 [exp]	2.0	0.9451
AT5G07810			SNF2 domain-containing protein...		Lus10015736 [exp]	6.2	0.9005
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	6.6	0.9530
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10013895 [exp]	8.7	0.8556
AT1G13810			Restriction endonuclease, type...		Lus10012108 [exp]	8.7	0.8597
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	11.7	0.9436
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	15.2	0.9374
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10032497 [exp]	15.5	0.8765
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10029016 [exp]	16.1	0.9319
AT4G03010			RNI-like superfamily protein (...		Lus10033744 [exp]	19.6	0.9301

Compare expression of checked genes

Lus10000355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.