Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14520 178 / 9e-54 pescadillo-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001362 [exp] 240 / 2e-82 AT5G14520 164 / 3e-48 pescadillo-related (.1) Lus10000618 [exp] 250 / 4e-81 AT5G14520 787 / 0.0 pescadillo-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G121400 [exp] 179 / 4e-54 AT5G14520 799 / 0.0 pescadillo-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06732 [flax] [poplar] Pescadillo_N Pescadillo N-terminus
Representative CDS sequence Show only first row Show all	>Lus10000357 pacid=23175443 polypeptide=Lus10000357 locus=Lus10000357.g ID=Lus10000357.BGIv1.0 annot-version=v1.0 ATGACGAAGACGGACATCGCGAAGAAGACATCGGCCAAGCTGAAGAAGAACAAACACTACAGACCTTCTGGGAAGAAGAAGGAAGGGAACGCTGCCCGGT ACATGACCCGGTCGCAGGCTATCAAGCAGCTCCAAGTTAATCTCAACGTCTTCAGGCAGCTCTGCATTCTCAAAGGTGTGTTCCCTAGAGAACCGAAGAA GAAGGTTAGAGGGAATAACCAGACGTACTACCATGTCAAGGATATAAATTTCATCCAACATGAACCCTTACTTGAGAAGTTGAGGGAAAAGAGGGCATAC GAAAGGAAAATACAGAAGGCTTTGGCTAAGAAGAACGAAGATCTAGCAACTCGTCTTCGAACTCGAGAGCCAACTTACACATTGGACAAGCTCATTCTGG AAAGGTTTATTAAGCCCATTGATTTATTAGATTCCCTTTGA
AA sequence Show only first row Show all	>Lus10000357 pacid=23175443 polypeptide=Lus10000357 locus=Lus10000357.g ID=Lus10000357.BGIv1.0 annot-version=v1.0 MTKTDIAKKTSAKLKKNKHYRPSGKKKEGNAARYMTRSQAIKQLQVNLNVFRQLCILKGVFPREPKKKVRGNNQTYYHVKDINFIQHEPLLEKLREKRAY ERKIQKALAKKNEDLATRLRTREPTYTLDKLILERFIKPIDLLDSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14520			pescadillo-related (.1)		Lus10000357 [exp]	0	1
AT4G34910			P-loop containing nucleoside t...		Lus10015433 [exp]	2.2	0.9452
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001371 [exp]	2.2	0.9260
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032320 [exp]	3.0	0.9200
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	5.3	0.9364
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10023111 [exp]	6.0	0.9355
AT5G51540			Zincin-like metalloproteases f...		Lus10031136 [exp]	6.2	0.8863
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10024454 [exp]	7.0	0.9226
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	10.0	0.9266
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	11.0	0.9068
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10014279 [exp]	11.5	0.8373

Compare expression of checked genes

Lus10000357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.