Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47290 298 / 3e-101 AT3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) AT2G26260 293 / 4e-97 AT3BETAHSD/D2 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) AT2G43420 186 / 7e-56 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) AT2G33630 97 / 2e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G45400 63 / 2e-11 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G14700 58 / 9e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 57 / 1e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 56 / 4e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G78570 55 / 1e-08 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT1G53500 53 / 4e-08 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010311 [exp] 424 / 4e-149 AT2G26260 664 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10013413 [exp] 422 / 2e-147 AT2G26260 724 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10030720 [exp] 105 / 3e-26 AT2G33630 720 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013202 [exp] 105 / 4e-26 AT2G33630 714 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004797 [exp] 79 / 1e-18 AT2G43420 110 / 1e-28 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Lus10021740 [exp] 60 / 2e-10 AT4G33360 551 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10041651 [exp] 59 / 3e-10 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10004028 [exp] 58 / 1e-09 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012930 [exp] 56 / 5e-09 AT2G33590 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218400 [exp] 324 / 4e-109 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Potri.007G131200 [exp] 179 / 9e-54 AT2G43420 501 / 3e-174 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Potri.002G005100 [exp] 108 / 1e-27 AT2G33630 738 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G257700 [exp] 57 / 1e-09 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 57 / 1e-09 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G181400 [exp] 56 / 3e-09 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.002G147500 [exp] 56 / 5e-09 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 56 / 5e-09 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G004100 [exp] 55 / 9e-09 AT2G33590 438 / 1e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G046400 [exp] 54 / 2e-08 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Lus10000358 pacid=23175813 polypeptide=Lus10000358 locus=Lus10000358.g ID=Lus10000358.BGIv1.0 annot-version=v1.0 ATGTCCGGGGACGATGGGGCGAGATTGTGCGTGGTCACCGGCGGCAGGGGCTTTGCCGCCCAGCATTTGATTGAAATGCTCATCCGATTGGACAAGTTTC TGGTTCGGATCGCTGATTTGGCTCCCGCAATCGAGCTCAACCCTGAGGAAGTGGACGGAGACCTCGCCCGTGCATTGGAATCCGGCCGAGCTACCTATGT TTCCATGGATCTCTGCAATAAACCTCAAGTAATCAAAGCTCTTGAAGGAGCTGAAGTCGTCTTCCACATGGCGGCTCCGCATTCTGGTATCAATAACTAC GAACTCCACTACTCAGTCAACGTTCAAGGAACGAAGAATGTAATTGATGCTTGCGTGGAGCTTGAAGTGAAGAGCCTGATCTACACTAGCTCTGCTAGTG TAGTATTTGATGGGATTAATCCAATTCACAATGGAGACGAATCACTGCTTTATCCGCCTAAGCCTCTTGATTCGTACTCTGCAACTAAAGCAGAAGCTGA GGCTGCCGTCCTCAAGGCAAACGGTACCAATGGTCTTCTCACGTGCTCCTTACGTCCTAGTAGCATATTTGGCCCTGGAGATAAGTTGTTTGTTCCTTCT CTTGCTGAGAATGGAAAGGCTGGGAAGTCCAAGGCGTATTTTATAACCAACATGGAACCTATGAAGTTCTAG
AA sequence Show only first row Show all	>Lus10000358 pacid=23175813 polypeptide=Lus10000358 locus=Lus10000358.g ID=Lus10000358.BGIv1.0 annot-version=v1.0 MSGDDGARLCVVTGGRGFAAQHLIEMLIRLDKFLVRIADLAPAIELNPEEVDGDLARALESGRATYVSMDLCNKPQVIKALEGAEVVFHMAAPHSGINNY ELHYSVNVQGTKNVIDACVELEVKSLIYTSSASVVFDGINPIHNGDESLLYPPKPLDSYSATKAEAEAAVLKANGTNGLLTCSLRPSSIFGPGDKLFVPS LAENGKAGKSKAYFITNMEPMKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47290		AT3BETAHSD/D1	3beta-hydroxysteroid-dehydroge...		Lus10000358 [exp]	0	1
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10002961 [exp]	10.3	0.8698
AT1G16900			Alg9-like mannosyltransferase ...		Lus10028153 [exp]	10.4	0.8601
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	14.1	0.8650
AT1G04780			Ankyrin repeat family protein ...		Lus10000752 [exp]	14.1	0.8621
AT2G42520			P-loop containing nucleoside t...		Lus10015976 [exp]	18.3	0.8616
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	24.9	0.7989
AT5G07720			Galactosyl transferase GMA12/M...		Lus10015721 [exp]	33.0	0.8449
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10028534 [exp]	37.1	0.8541
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	47.7	0.8497
AT5G22120			unknown protein		Lus10008366 [exp]	51.4	0.8115

Compare expression of checked genes

Lus10000358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.