Plant FIBer expression Database

Lus10000360 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06160 724 / 0 ATO ATROPOS, splicing factor-related (.1)
AT4G01000 46 / 4e-05 Ubiquitin-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019024
[exp]
939 / 0 AT5G06160 730 / 0.0 ATROPOS, splicing factor-related (.1)
Lus10010125
[exp]
49 / 1e-05 AT4G01000 333 / 6e-111 Ubiquitin-like superfamily protein (.1)
Lus10012629
[exp]
44 / 0.0003 AT4G01000 327 / 2e-108 Ubiquitin-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G017200
[exp]
793 / 0 AT5G06160 720 / 0.0 ATROPOS, splicing factor-related (.1)
Potri.012G012800
[exp]
788 / 0 AT5G06160 718 / 0.0 ATROPOS, splicing factor-related (.1)
Potri.014G098100
[exp]
48 / 1e-05 AT4G01000 135 / 5e-35 Ubiquitin-like superfamily protein (.1)
Potri.002G170200
[exp]
48 / 2e-05 AT4G01000 125 / 2e-31 Ubiquitin-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12108 SF3a60_bindingd Splicing factor SF3a60 binding domain
CL0361 C2H2-zf PF11931 DUF3449 Domain of unknown function (DUF3449)
Representative CDS sequence
>Lus10000360 pacid=23175812 polypeptide=Lus10000360 locus=Lus10000360.g ID=Lus10000360.BGIv1.0 annot-version=v1.0
ATGTCGTCAACTCTGCTGGAGGTCACTCGGGCTTCTCATGAGGAGGTAGAGCGGATGGAGCGCCTCATAGTGAAGGAGTTCCAGAACGATCCCACTAGCA
GCAAGGATCGCCTCCTCCAGGGCCACCGCGTTCGTAACATGATCGAAGAGATTGTCTCCACCAGCCATAAGCTCGTTGATATATACGAAGATAAGGATCA
TGCGAGGAAGGACGAGATTGCGGCTCTGGGAGCTCAGGCAGCTGGCGGGAATGTGTTTAGTACATTTTATGATAGATTGAAAGAGATTCGAGAATACCAT
AGAAGGCATCCGGCTGCACGCGGCGTGGTGGATGTGACTGATCCATATGAGGCACTCCTAAAAGAGGAACCAGTCATTGAATTCACTGGGGAGGAAGCTC
ATGGGAAATATCTTGACTTGCATGAACTATACAATCAGTTCATCAATTCAAAATTTGGGGTGCCTCGTAGTGATAAAAAAGGAATGGAAGAGTCACGGAT
TGAATACTCAGCCTATCTCAATGTTTTTTCTAAACCACATAAAATTGATCGTAAACTCAAGTCAACCAGGCAATACAGGGAATACATTGGGAATCTTTTG
GAGTATTTGGTTTATTTCTTCCAACGTACAGAGCCATTGCAAGATCTTGATAGAATCTTCTCAAAGGTCGTAACTGAATTTGAAGAGCAATGGAAAGATA
GCAAGGTATCTGGATGGGAGGGGGCTCAGGAAAATGGCCCTGTTCCAGGTCAAGATGCAACAATTGATCTTGATTATTACAGTACAGTAGAAGAGCTGAT
GGAAGTGGGTCCTGAAAAATTAAAAGAAGCGTTGGCTTCATTGGGATTAAAGACCGGGGGCACCCCTCAGCAACGTGCAGAACGACTCTTTCTCACAAAG
CATACTCCTCTGGAGAAATTGGACAAGAAACATTTTGCCAAAGGTTCGCACAGGCCAGTTCTGAATGGAGCTGCTGTTGATTCAAATGAGAATAACAATT
CAAAGGAAATAGCATTGATGGAGGCAAAAATTATAAAAGTGTGCAGCTTATTGAGTGAGACAATTGAAAGGACAAAAGAGAATGTGGAGAAGAAGCAGGC
TCTGACATATGAGGAAATGGAAACAGAACGTCAGGAGGAGGAGCTGCAAGCAGAAAGTGAAAGCGACGACGAAGACCAGCAGATCTACAATCCCCTCAAG
TTGCCTATGGGATGGGATGGGAAGCCTATACCTTACTGGCTTTATAAGCTTCATGGGCTCGGTCAGGAATTCAAGTGCGAGATATGTGGTAATTACAGTT
ACTGGGGACGTAGGGCTTATGAGCGACACTTCAAAGAGTGGCGGCATCAGCATGGAATGCGCTGTCTAAACATTCCAAACACCAAGAATTTCAATGAGAT
CACGTCCATTGAAGAAGCGAAAGAGTTGTGGAAAAGGATACAAGAGAGGCAAGGAGTGAACAAGTGGCGTCCAGAATTGGAAGAAGAATACGAAGACAAA
GAAGGCAACATCTATAACAAGAAGACCTACACTGATCTCCAGCGTCAGGGCTTAATATGA
AA sequence
>Lus10000360 pacid=23175812 polypeptide=Lus10000360 locus=Lus10000360.g ID=Lus10000360.BGIv1.0 annot-version=v1.0
MSSTLLEVTRASHEEVERMERLIVKEFQNDPTSSKDRLLQGHRVRNMIEEIVSTSHKLVDIYEDKDHARKDEIAALGAQAAGGNVFSTFYDRLKEIREYH
RRHPAARGVVDVTDPYEALLKEEPVIEFTGEEAHGKYLDLHELYNQFINSKFGVPRSDKKGMEESRIEYSAYLNVFSKPHKIDRKLKSTRQYREYIGNLL
EYLVYFFQRTEPLQDLDRIFSKVVTEFEEQWKDSKVSGWEGAQENGPVPGQDATIDLDYYSTVEELMEVGPEKLKEALASLGLKTGGTPQQRAERLFLTK
HTPLEKLDKKHFAKGSHRPVLNGAAVDSNENNNSKEIALMEAKIIKVCSLLSETIERTKENVEKKQALTYEEMETERQEEELQAESESDDEDQQIYNPLK
LPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAYERHFKEWRHQHGMRCLNIPNTKNFNEITSIEEAKELWKRIQERQGVNKWRPELEEEYEDK
EGNIYNKKTYTDLQRQGLI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G06160 ATO ATROPOS, splicing factor-relat... Lus10000360
[exp]
0 1
AT3G10030 Trihelix aspartate/glutamate/uridylate ... Lus10008988
[exp]
1.0 0.9292
Lus10005797
[exp]
2.4 0.8993
AT4G39280 phenylalanyl-tRNA synthetase, ... Lus10014563
[exp]
5.5 0.8947
AT1G32730 unknown protein Lus10040132
[exp]
5.8 0.8856
AT3G01330 E2F_DP E2FF, E2L2, DEL... E2F-LIKE 2, DP-E2F-like protei... Lus10005840
[exp]
6.0 0.8918
AT5G44280 ATRING1A ARABIDOPSIS THALIANA RING 1A, ... Lus10039845
[exp]
6.3 0.9015
AT2G35035 URED urease accessory protein D (.1... Lus10030170
[exp]
6.7 0.8961
Lus10012330
[exp]
7.0 0.8660
AT2G13650 GONST1 golgi nucleotide sugar transpo... Lus10024126
[exp]
8.1 0.8900
AT1G79020 Enhancer of polycomb-like tran... Lus10034778
[exp]
8.5 0.8804

Lus10000360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.