Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24170 177 / 2e-57 Got1/Sft2-like vescicle transport protein family (.1) AT5G23550 131 / 3e-39 Got1/Sft2-like vescicle transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019023 [exp] 241 / 7e-83 AT5G24170 204 / 3e-68 Got1/Sft2-like vescicle transport protein family (.1) Lus10029537 [exp] 137 / 2e-41 AT5G23550 275 / 7e-96 Got1/Sft2-like vescicle transport protein family (.1) Lus10039619 [exp] 137 / 2e-41 AT5G23550 279 / 3e-97 Got1/Sft2-like vescicle transport protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G012700 [exp] 182 / 1e-59 AT5G24170 224 / 3e-76 Got1/Sft2-like vescicle transport protein family (.1) Potri.015G017300 [exp] 181 / 3e-59 AT5G24170 220 / 1e-74 Got1/Sft2-like vescicle transport protein family (.1) Potri.004G135000 [exp] 139 / 2e-42 AT5G23550 224 / 1e-75 Got1/Sft2-like vescicle transport protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04178 [flax] [poplar] Got1 Got1/Sft2-like family
Representative CDS sequence Show only first row Show all	>Lus10000361 pacid=23175811 polypeptide=Lus10000361 locus=Lus10000361.g ID=Lus10000361.BGIv1.0 annot-version=v1.0 ATGAAGAAATTGAAGCAGTTCATAGTCGGGGACGAAGATGGAGACAGAGGAGAGAGCTTTTTGGAAGAAGAAGATTCGGATAGTTTCGGTTCCCTTTCTG CAACGCAGAAAATGTACGCATTTGCTGCTTGTCTGGTTGCTGCCCTGGCTTGTATGTTCATGTCATTGGTTGTGTTCGCGAAACCCATACAGTTAGCATT ATTGTTCACTTTTGGTAACATATTGGCAGTAAGAAGCACAGCCTTTCTCATTGGAACTGGTCAGCAACTCACTATGATGTTTGATTCTACCCGTTTATAT GCCACATCCATTTATCTTGGATCGGTCGTCGTCTCTCTCATATGTGCTCTCTTGATCCATAACAAGGTTTTAACACTAATTGCAATCATTTGTGAAGTCT GTGCCCTGATTTGGTACAGTTTGAGCTACATTCCATTTGCTCGAAAAATGGTATCCAACTTGATGGTTCGGTTATGTGACACTGAACTGTGA
AA sequence Show only first row Show all	>Lus10000361 pacid=23175811 polypeptide=Lus10000361 locus=Lus10000361.g ID=Lus10000361.BGIv1.0 annot-version=v1.0 MKKLKQFIVGDEDGDRGESFLEEEDSDSFGSLSATQKMYAFAACLVAALACMFMSLVVFAKPIQLALLFTFGNILAVRSTAFLIGTGQQLTMMFDSTRLY ATSIYLGSVVVSLICALLIHNKVLTLIAIICEVCALIWYSLSYIPFARKMVSNLMVRLCDTEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24170			Got1/Sft2-like vescicle transp...		Lus10000361 [exp]	0	1
AT3G49055			unknown protein		Lus10021563 [exp]	6.6	0.6170
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Lus10036634 [exp]	12.9	0.6351
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10028440 [exp]	30.0	0.6201
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018411 [exp]	51.2	0.5598
AT4G29530			Pyridoxal phosphate phosphatas...		Lus10008573 [exp]	98.1	0.5373
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10008909 [exp]	120.8	0.5285
AT5G44450			methyltransferases (.1)		Lus10042846 [exp]	192.6	0.4771
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10016286 [exp]	205.4	0.4911

Compare expression of checked genes

Lus10000361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.