Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25180 59 / 7e-10 RNA polymerase III RPC4 (.1) AT5G09380 58 / 1e-09 RNA polymerase III RPC4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019022 [exp] 237 / 2e-77 AT5G09380 191 / 4e-59 RNA polymerase III RPC4 (.1) Lus10009019 [exp] 60 / 3e-10 AT4G25180 174 / 2e-52 RNA polymerase III RPC4 (.1) Lus10009655 [exp] 59 / 5e-10 AT4G25180 169 / 2e-50 RNA polymerase III RPC4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G126700 [exp] 100 / 4e-25 AT5G09380 226 / 2e-73 RNA polymerase III RPC4 (.1) Potri.006G143500 [exp] 99 / 3e-24 AT5G09380 231 / 3e-75 RNA polymerase III RPC4 (.1) Potri.003G107300 [exp] 66 / 3e-12 AT4G25180 192 / 4e-59 RNA polymerase III RPC4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [flax] [poplar] Triple_barrel PF05132 [flax] [poplar] RNA_pol_Rpc4 RNA polymerase III RPC4
Representative CDS sequence Show only first row Show all	>Lus10000362 pacid=23175809 polypeptide=Lus10000362 locus=Lus10000362.g ID=Lus10000362.BGIv1.0 annot-version=v1.0 ATGATTCTGCTATCTCCCTTTCATATTAGTAGGGCTTCGAATAAGCAGCACTCAGTGATCCACTTTTGCCATTACTGGCTCAGCTCAGCAGAAAGTTTTG CCTGTCATAAGTTCGCGCCAAAAGCTCCTCCTCGCCGGGCACCCAAGCCTGAAGTCAAGGCAGAAAAGACAGAACAAGAGGATGAACAGGCTATGAAGCT GATGCAACAGTTTCAATTCGTTATTGCATCGATACTGCTTGTGATAACGAATGCATCACCCCGTGGTGCTGTTTTGATCCTTCAGAGTGATAATTCATTT TCACATCACAAGCTTCACAAATTGCATTTGGAACTGGGGGGGTCTTCTACCTTAAGATCATATGGCATGCCCAGACTTAGGAACATGGATAACAATGAAG TTGAGGCTGCACCAAGTGCGGCTCAGAAAGAGTACCAGGAACCATGGGAGCAGGAAGAAAATGCCGAACCGACAATGATGTTTATTCAACTACCCCCTAC CATGCCCGTGTCGAAGAAAACGTCTGGCAAAGGCAACTCAGCTCGATCGCGAAATGCAGGATCCAAGTTAGAGGATTTACCTGCTGGATTCATGGGTAAA CTGCTAGTGTACAGAAGTGGTGCAGTTACGCTGAAGCTTGGTGATACGGTTTACATTAACGGGCTGTGTATTCATGTTGGAAAAATCAACGTGGCAGAGG TTGACAAGCGCGCAATTTTGATCCCCGACATTGAAGCCATCACATCAAACATCGCCGATTAG
AA sequence Show only first row Show all	>Lus10000362 pacid=23175809 polypeptide=Lus10000362 locus=Lus10000362.g ID=Lus10000362.BGIv1.0 annot-version=v1.0 MILLSPFHISRASNKQHSVIHFCHYWLSSAESFACHKFAPKAPPRRAPKPEVKAEKTEQEDEQAMKLMQQFQFVIASILLVITNASPRGAVLILQSDNSF SHHKLHKLHLELGGSSTLRSYGMPRLRNMDNNEVEAAPSAAQKEYQEPWEQEENAEPTMMFIQLPPTMPVSKKTSGKGNSARSRNAGSKLEDLPAGFMGK LLVYRSGAVTLKLGDTVYINGLCIHVGKINVAEVDKRAILIPDIEAITSNIAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10000362 [exp]	0	1
					Lus10021618 [exp]	8.0	0.8347
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029570 [exp]	9.8	0.8365
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	11.0	0.8477
AT5G43745			Protein of unknown function (D...		Lus10039407 [exp]	21.6	0.8338
AT3G13690			Protein kinase protein with ad...		Lus10011656 [exp]	21.9	0.7952
AT1G17930			Aminotransferase-like, plant m...		Lus10027047 [exp]	23.5	0.8314
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	23.6	0.8357
					Lus10020450 [exp]	25.7	0.7279
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	35.5	0.8335
					Lus10011047 [exp]	35.9	0.8314

Compare expression of checked genes

Lus10000362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.