Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22960 605 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 296 / 2e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 290 / 3e-87 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT4G19440 290 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39710 284 / 7e-85 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 280 / 1e-84 RPF2 rna processing factor 2 (.1) AT5G65560 283 / 3e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 277 / 4e-82 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 274 / 5e-82 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 273 / 7e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034616 [exp] 1404 / 0 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 312 / 1e-94 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 309 / 3e-94 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 295 / 6e-90 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10027914 [exp] 272 / 3e-80 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042529 [exp] 277 / 4e-80 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 276 / 5e-80 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 270 / 2e-79 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 273 / 3e-79 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 323 / 1e-99 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 309 / 3e-93 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G025600 [exp] 302 / 4e-92 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 297 / 1e-89 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G050300 [exp] 288 / 9e-88 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 288 / 1e-87 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G015900 [exp] 290 / 3e-87 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 285 / 7e-86 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 292 / 1e-85 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098400 [exp] 287 / 1e-85 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000364 pacid=23171872 polypeptide=Lus10000364 locus=Lus10000364.g ID=Lus10000364.BGIv1.0 annot-version=v1.0 ATGTCAATGACCCTCTCCCTACGAGCTTCAAAGGCTTTACCTTCCTCATCCTTCTTCCTCGAGGTACGTCGCCGTTGTTTCCCTATTGTTCCCCGCCTTC TTACCGCCGAAGCTGCTGCAGAGCCACTTGCTGAATCAATTCCCCCTAAATCTACCCATCATTACAAAGACCTTATTTTTAGCACTGTTCAGCATAAGCC TTTTGCCTATTACAACCAAAGCTGGGGATTTGAGCAGTTTCACCCTGTAATTACTGATCCTGACTTGCTGGCTCGAGTCATATCCTCGATGCGTGAAAAT CCCAAAGTAGTTTTGAGGTTTTTCAGATGGGTTCAGAGCCAACCAGGGTTTAAGTGCTCGGAATCTGTGTTTTGCGCTCTTCTTGAGGTTTTGGTGGATA GCGGTATGATGAGGCCTGCTTATTGGGTTGTGGAGAGGGTGATTGAAAGACAAATGGATGGGATTGTCGACGTATTGATTGGTAATAATTGGCGCTTTGA TTCTCCAGTTTTGATCAAGATTCTTGATCTTTTGCTGTGGGTTTACACCAAGAAATCCATGGTTAAGCAGTGTTTGTTGGTTTTTGAGAAGATGCTGAAA AGTGGGATGTTGCCTGATGTTAAGAACTGCAACAGGATTCTCAGGGTGCTTCGAGACAAGAAGATGGAAGTTGAAGCTAATCAAGTGTATGGAATGATGG GAGAATATGGAGTTAAGCCTACAACCATTACGTATAATACAATGTTGGATTTGCTTTGCAAGGAAGGCAGGGTGCAGCAAGTCCTGAATCTTGTGTCAGA GATGCAAACCGCTGGTGTTGCTCCCAACGAAGTGACACATAATGTGTTGATCAATGGGTTGTCGAAAAGAGGGGAGTTAGAGCAAGCTTTGGGATTGATA GGGGAGATGATGCAAGCAGGATTGGGAGTTTCATCCTATACCTATAATCCTCTAATTTTCGAGTATTGCAAAAGAGGGTTGTTTATCGAGGCGTTGGGCC TTGGAAACGAGATGGTGACAAAAGGGGTGGCTCCTACAGTATCAACTCATAATGCAATCATCTATGGGTTCTGCAAATATGGGAGAATAAGTGATGCTAG GAAGCTGTTAGTAGACATGTTGAGGAACAATGTGATGCCAGACATAATTTCGTATAATTCGCTTATTTATGGGTACTGTAGGTTGGGGCATGTTGGTGCT GCTTTTCTTTTGTTTGACGAGTTAAGTTATCGGAGGATTTGTCCTACTGTGGTTACATATAATACGCTCATAGATGGGCTTTGCAGATTGGGGGATTTGG AAGGTGCTCGAAAGCTGAAATATGATATGGTCAGTCATGGGATCCTTCCTGATGTCTTTACCTACACCATTCTTGTTAATGGTTCGTGCAAGTTCAGAAA TATGTCCATGGCCAAGGAATTTTTCAATGAGATGCTGCGTGCAGGGTTATCGCCTGATCGGTATACATATACTGCACGGATTATGGGTGAACTGCAGATT GGTGACGCAACTAAGGCATTTGATTTACAGGAAAAAATGCAGGCTAAGGGGATCCCTCCTGGTGTATTTACCTATAATGTCCTTATCTATGGACTGTATA GGTTGGGTAAGTTTGAAGATGCTGAAGAAACTTTGCAGAAAATGGTTAAAGATGGTTTAGTCCCTGATCATATAACCTACACCACCATCATACATGCACA TTTGGAAAATGGGCGTCTGATGAAAGGCAGGGAGATCTTCTACGAGATGTTGAGCACGGGGCAGAAGCCTACAGTCGTAACTTACACGATATTGATTCAC GCTCATGCACTCAACGGGAGGCTTGAATTGGCAACCACATTTTTTTCGGAGATGCAAAACAAAGGGCTCGTTCCGAATGTTATCACGTACAACGCTTTGA TAAATGGATTTTCCAAAGTAGGAGAGATGTATCAAGCATACACATATTTTCACGAGATGGAACGAAAAGGTGTATCTCCTAACAAGTACACGTTCACCAT ATTGATTAGTGGGAATTGCGACATTGGGGACTGGCAGGGGGCTTTGTCACTATACAAAGATATGCTAGATAGAGAGATTAAGCCAGATTCTTGTACTCAT GGTGCACTGTTGAAAGACCTGCATAAAGACTACAAATTGCACGCTGTTCAGTACATGGAGAGTTTGTTAGTTGAAGATAGTGATGCGTCAATGGTCGATA CATTTGATGCTGCCAGAGGCTAG
AA sequence Show only first row Show all	>Lus10000364 pacid=23171872 polypeptide=Lus10000364 locus=Lus10000364.g ID=Lus10000364.BGIv1.0 annot-version=v1.0 MSMTLSLRASKALPSSSFFLEVRRRCFPIVPRLLTAEAAAEPLAESIPPKSTHHYKDLIFSTVQHKPFAYYNQSWGFEQFHPVITDPDLLARVISSMREN PKVVLRFFRWVQSQPGFKCSESVFCALLEVLVDSGMMRPAYWVVERVIERQMDGIVDVLIGNNWRFDSPVLIKILDLLLWVYTKKSMVKQCLLVFEKMLK SGMLPDVKNCNRILRVLRDKKMEVEANQVYGMMGEYGVKPTTITYNTMLDLLCKEGRVQQVLNLVSEMQTAGVAPNEVTHNVLINGLSKRGELEQALGLI GEMMQAGLGVSSYTYNPLIFEYCKRGLFIEALGLGNEMVTKGVAPTVSTHNAIIYGFCKYGRISDARKLLVDMLRNNVMPDIISYNSLIYGYCRLGHVGA AFLLFDELSYRRICPTVVTYNTLIDGLCRLGDLEGARKLKYDMVSHGILPDVFTYTILVNGSCKFRNMSMAKEFFNEMLRAGLSPDRYTYTARIMGELQI GDATKAFDLQEKMQAKGIPPGVFTYNVLIYGLYRLGKFEDAEETLQKMVKDGLVPDHITYTTIIHAHLENGRLMKGREIFYEMLSTGQKPTVVTYTILIH AHALNGRLELATTFFSEMQNKGLVPNVITYNALINGFSKVGEMYQAYTYFHEMERKGVSPNKYTFTILISGNCDIGDWQGALSLYKDMLDREIKPDSCTH GALLKDLHKDYKLHAVQYMESLLVEDSDASMVDTFDAARG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22960			Pentatricopeptide repeat (PPR)...		Lus10000364 [exp]	0	1
AT5G11430			SPOC domain / Transcription el...		Lus10008108 [exp]	16.7	0.7999
AT5G11700			unknown protein		Lus10007461 [exp]	21.1	0.8113
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10034777 [exp]	24.7	0.8000
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Lus10017823 [exp]	33.8	0.7548
AT3G09440			Heat shock protein 70 (Hsp 70)...		Lus10009071 [exp]	35.2	0.7191
AT2G23093			Major facilitator superfamily ...		Lus10011083 [exp]	40.5	0.7870
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10018844 [exp]	42.0	0.7639
AT5G13950			unknown protein		Lus10035121 [exp]	48.0	0.7354
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10023867 [exp]	49.3	0.7835
AT1G23880			NHL domain-containing protein ...		Lus10039421 [exp]	51.1	0.7738

Compare expression of checked genes

Lus10000364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.