Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08510 273 / 6e-88 FATB fatty acyl-ACP thioesterases B (.1) AT3G25110 241 / 4e-76 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 241 / 4e-76 Acyl-ACP thioesterase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034617 [exp] 771 / 0 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 513 / 0 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 489 / 7e-173 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10017751 [exp] 279 / 3e-90 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10033072 [exp] 279 / 3e-90 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10011839 [exp] 238 / 7e-75 AT3G25110 508 / 0.0 fatA acyl-ACP thioesterase (.1) Lus10038190 [exp] 234 / 1e-73 AT3G25110 493 / 1e-175 fatA acyl-ACP thioesterase (.1) Lus10025912 [exp] 234 / 3e-73 AT3G25110 503 / 1e-179 fatA acyl-ACP thioesterase (.1) Lus10022772 [exp] 229 / 2e-71 AT3G25110 493 / 8e-176 fatA acyl-ACP thioesterase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117400 [exp] 504 / 8e-179 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 413 / 2e-143 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.008G126200 [exp] 412 / 2e-143 AT1G08510 239 / 2e-75 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 280 / 6e-91 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 280 / 6e-91 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 273 / 6e-88 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.012G101500 [exp] 272 / 8e-88 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 269 / 1e-86 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 241 / 6e-76 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.002G245600 [exp] 238 / 7e-75 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01643 [flax] [poplar] Acyl-ACP_TE Acyl-ACP thioesterase
Representative CDS sequence Show only first row Show all	>Lus10000365 pacid=23171874 polypeptide=Lus10000365 locus=Lus10000365.g ID=Lus10000365.BGIv1.0 annot-version=v1.0 ATGTCTGCTTTCTCAACCCGCCTGGTTTGTTACCGTTTGCCTATGATCATCAGCAGCTATGGAAGGTTGAACACTGTGAAGGTCAACAGCGCAAAGTCAA CCCTGCAGTCGTATGGAAGTTTGGAGCTTGATCATATGGAAACGACAGAGGGGAACAAGAGGCAGAACATACCGACGGAGAAGAAGTACGTGGATAGGCA TAGACATGGTCTGATGATTGACAACGGTGTTGGATATCGGCAGACTGTCGTTATTCGTTCTTACGAAGTTGGTCCTGACAGAACTGCCACTCTCGACAGC ATCCTAAATCTTCTTCAGGAAACAGCACTGAATCATGTGTGGATGTCGGGGCTGCTGGGGAATGGATTCGGAGCAACTCATGGGATGGTCAAGAACAATC TCATCTGGGTTGTTTCCAGAATGCATGTTCTCATTGATCATTATCCTATCTGGGGGGAGATAGTGGAGATCGACACTTGGGTGGCAGCATCTGGTAAGAA TGGGATGCGTCGCGACTGGATCATTCGCAGCCAAGCCTCCGGCCATGTCTATGCCCGCGCTACAAGCACTTGGGTGATGATGAACGAGAAGACGAGGCGG CTATCAAAGATGCCAGACGTGGTTCGAGGGGAGATATCACCTTGGTTCATCGACAAACAAGCCATCCATCAGGACAATGCTAATATTGCCGCTGATAGAA TCGTCAAGTTGGACAACAATGCTAAATATGTCAACACTAACTTGAAGCCAAGGAGGAGTGACTTGGACATGAACCACCATGTCAACAATGTCAAGTATGT CAAATGGATGCTCGAGACAATCCCGGACAACTTCGTGGAGTCGCACCAGTTGTCTGGGATAATATTAGAGTACAGAAGGGAATGCAGGAGCTCGGACGTT GTACAATCGCTCTGTGAACCCGATGACGACACCATCAGCCTCCTCCAAAACTGCTTCATCAATAACGGCAGAAATTCAGACGAAAACAGCAACAACAACA GTATAGCAATACCGGATGAGATCTCATTGGCATCACAGATAATGCAAGGCAACGGACTCCTGTGCACCCTTGACAATCAGGAGCTCCTCGTTCATACAAG ATTCACGCATCTGCTTCAAACCCAACTGCCAGACGATACGGAGCCTAATTCATTCGAGGAGATCGTTCGGGGAAAGACCTTCTGGAAGAAGCACCCAAAG CCGCGGAATATGGATTATGACGATCAACCTTGA
AA sequence Show only first row Show all	>Lus10000365 pacid=23171874 polypeptide=Lus10000365 locus=Lus10000365.g ID=Lus10000365.BGIv1.0 annot-version=v1.0 MSAFSTRLVCYRLPMIISSYGRLNTVKVNSAKSTLQSYGSLELDHMETTEGNKRQNIPTEKKYVDRHRHGLMIDNGVGYRQTVVIRSYEVGPDRTATLDS ILNLLQETALNHVWMSGLLGNGFGATHGMVKNNLIWVVSRMHVLIDHYPIWGEIVEIDTWVAASGKNGMRRDWIIRSQASGHVYARATSTWVMMNEKTRR LSKMPDVVRGEISPWFIDKQAIHQDNANIAADRIVKLDNNAKYVNTNLKPRRSDLDMNHHVNNVKYVKWMLETIPDNFVESHQLSGIILEYRRECRSSDV VQSLCEPDDDTISLLQNCFINNGRNSDENSNNNSIAIPDEISLASQIMQGNGLLCTLDNQELLVHTRFTHLLQTQLPDDTEPNSFEEIVRGKTFWKKHPK PRNMDYDDQP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10000365 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10027523 [exp]	7.9	0.8926
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10001589 [exp]	9.8	0.8616
					Lus10029451 [exp]	13.2	0.8383
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10036930 [exp]	25.9	0.8094
AT2G45910			U-box domain-containing protei...		Lus10036359 [exp]	32.3	0.7917
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	33.3	0.8335
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10041626 [exp]	39.2	0.8214
AT2G14830			Regulator of Vps4 activity in ...		Lus10039808 [exp]	45.3	0.7643
					Lus10029825 [exp]	58.3	0.8006
AT5G62750			unknown protein		Lus10004267 [exp]	59.1	0.8169

Compare expression of checked genes

Lus10000365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.