Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15110 589 / 0 PSS1 phosphatidylserine synthase 1, phosphatidyl serine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034618 [exp] 654 / 0 AT1G15110 724 / 0.0 phosphatidylserine synthase 1, phosphatidyl serine synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117500 [exp] 602 / 0 AT1G15110 716 / 0.0 phosphatidylserine synthase 1, phosphatidyl serine synthase family protein (.1.2) Potri.008G126100 [exp] 598 / 0 AT1G15110 725 / 0.0 phosphatidylserine synthase 1, phosphatidyl serine synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03034 [flax] [poplar] PSS Phosphatidyl serine synthase
Representative CDS sequence Show only first row Show all	>Lus10000366 pacid=23171873 polypeptide=Lus10000366 locus=Lus10000366.g ID=Lus10000366.BGIv1.0 annot-version=v1.0 ATGGAGCCTAACGGTGGCAAACGAGTGAAGAGAAAAGATCAGCTTGTACATGAAAATGGTGGTTTAGTGGTCTCTAGCGTTGGAGATGTAGATCCATGGA CTGCATGGGCATACAAGCCACGCACCATTTCGCTGTTACTTGTTGGTGCATGCTTTCTTATTTGGGCAAGCGGATCCCTTGATCCTGAAAGCAGCTCAGC TGGTGATGTTGTTATATCAGTGAAAAGGGGTATATGGGCAATGATAGCGGTCTTTCTTGCTTATTGCTTACTGCAAGCTCCATCTACGATACTTATAAGA CCACATCCTGCAATTTGGCGGTTAGTTCATGGCATGGCTGTTATCTATCTGGTGGCCCTCACATTTTTGCTTTTCCAGAAGCGTGATGATGCTAGACAGT TCATGAAGTTCCTCCATCCTGACCTTGGAGTAGGAAGTAGGGGTATGGTGGTTTTGGGTTGGCTTTTGATTTTGGATACGCTTTTCGATGAATTTGTTCT AGCTCATATATTTGGATGGTGGGGCAAGGCTATACTAATCCGCAATCAAGCTCTTCTTTGGGTGTTATCTGTTGGATTTGAGTTGCTAGAGTTTACCTTT CGCCACATGTTACCGAATTTCAACGAGTGCTGGTGGGATAGTATCATTCTCGACATACTTACATGCAATATGTTCGGTATATGGGCAGGGATGCGTACTG TAAGATACTTTGATGGTAAAACGTACGAGTGGATTGGTATTAGTCGACAGCCTAACATCATGGGAAAGGTAAAACGCACACTTGGACAGTTTACTCCGGC ACATTGGGACAAGGATGAATGGCATCCATTGCTTGGTCCGTGGCGATTTCTTCAAGTTCTGACTCTCTGCATAATCTTCCTAACAGTAGAGCTCAACACA TTCTTTCTCAAGTTCTGTCTTTGGCTCCCTCCGCGCAACCCTGTCATAATGTACAGATTGATCTTATGGTGGCTTATTGCCATCCCAACAATTCGTGAAT ACAACTCATATCTTCAGGATCGGAAACCGGTGAAAAAGGTTGGAGCTTTCTGTTGGCTTTCTGTTGCTATCTGCATTATTGAACTTCTTATCTGCATCAA GCTGGAAATCATGTATAAGCTTCTGTTGGTCAGGTTTGTTCCCGATCCCCATGCCTACGTTGTTGGTTGTCTTTTGGACGAGCGTTGGAGTTTCATTGGT ATTGTCGGTGCTAGTATGGTCGTGGCAATTGCAACGAAGAAGTTGCGAGAGAAAGAGACGATGAAGATTTTGCTGGTAGCCCTACTCATTTTATCCTATG ATTCTTTTTGTACTATGCTGCCTTTGTCGTAG
AA sequence Show only first row Show all	>Lus10000366 pacid=23171873 polypeptide=Lus10000366 locus=Lus10000366.g ID=Lus10000366.BGIv1.0 annot-version=v1.0 MEPNGGKRVKRKDQLVHENGGLVVSSVGDVDPWTAWAYKPRTISLLLVGACFLIWASGSLDPESSSAGDVVISVKRGIWAMIAVFLAYCLLQAPSTILIR PHPAIWRLVHGMAVIYLVALTFLLFQKRDDARQFMKFLHPDLGVGSRGMVVLGWLLILDTLFDEFVLAHIFGWWGKAILIRNQALLWVLSVGFELLEFTF RHMLPNFNECWWDSIILDILTCNMFGIWAGMRTVRYFDGKTYEWIGISRQPNIMGKVKRTLGQFTPAHWDKDEWHPLLGPWRFLQVLTLCIIFLTVELNT FFLKFCLWLPPRNPVIMYRLILWWLIAIPTIREYNSYLQDRKPVKKVGAFCWLSVAICIIELLICIKLEIMYKLLLVRFVPDPHAYVVGCLLDERWSFIG IVGASMVVAIATKKLREKETMKILLVALLILSYDSFCTMLPLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10000366 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10018124 [exp]	7.3	0.6891
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10021930 [exp]	13.0	0.6476
AT4G12010			Disease resistance protein (TI...		Lus10009107 [exp]	14.5	0.6105
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031306 [exp]	16.9	0.6166
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	24.9	0.6643
AT4G14230			CBS domain-containing protein ...		Lus10004429 [exp]	31.5	0.5786
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10035082 [exp]	54.2	0.6016
AT3G60070			Major facilitator superfamily ...		Lus10034394 [exp]	54.3	0.5996
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	78.7	0.5940
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	84.9	0.5654

Compare expression of checked genes

Lus10000366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.