Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58610 71 / 5e-13 PHD finger transcription factor, putative (.1) AT5G63900 68 / 4e-12 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT1G49480 59 / 9e-10 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18990 58 / 4e-09 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT5G36740 52 / 8e-07 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT3G14980 48 / 1e-05 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 48 / 1e-05 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT4G31690 46 / 3e-05 B3 REM9 Transcriptional factor B3 family protein (.1) AT2G24690 45 / 8e-05 B3 REM11 Transcriptional factor B3 family protein (.1) AT2G37520 43 / 0.0004 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012522 [exp] 200 / 5e-58 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10025388 [exp] 127 / 8e-34 AT4G33280 70 / 8e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10003352 [exp] 121 / 6e-33 AT5G58610 77 / 7e-17 PHD finger transcription factor, putative (.1) Lus10025387 [exp] 110 / 9e-26 AT5G58610 428 / 5e-132 PHD finger transcription factor, putative (.1) Lus10015266 [exp] 109 / 3e-25 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10039303 [exp] 108 / 3e-25 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025386 [exp] 107 / 1e-24 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 100 / 4e-22 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10002934 [exp] 86 / 5e-18 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072600 [exp] 92 / 9e-20 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.004G230100 [exp] 85 / 1e-17 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G118600 [exp] 83 / 9e-17 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.004G147000 [exp] 79 / 9e-16 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 71 / 3e-13 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 70 / 6e-13 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 62 / 2e-10 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 61 / 5e-10 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.014G036800 [exp] 51 / 1e-06 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.001G392801 [exp] 45 / 7e-05 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10000368 pacid=23159121 polypeptide=Lus10000368 locus=Lus10000368.g ID=Lus10000368.BGIv1.0 annot-version=v1.0 ATGTCTGCCACTGAAATTGATTACAAGACTAAAGAAGCTAGTAGAGTTGTTAAGCTAGAATGTGGAGTAGTAGATGCCTCTGATGTTCCCTCAAATGATC AATTACTTTCCCCAAAGACAAGAGAGAAACCACTATTAAGATCTTCCCAGCCTCATAAGCTGAGAAGAACAACAAACCAGAACTCTGAGACTGTAGTATG CTGTGGTTCCGGTTCTAGTGTGGTTAAGCAAAGGAAAAGGGCTATGACTAGTGATCATACTTCAGATAACCAAGCTAAAGAAGCAATGTCATGGAGGCAA AAGCCATTGACAAAAGCTGAGAAAGCTAGAGTGCTTGCTAGAGCTACTGCTACTTTCAAATCTGAAAACCCTTCCTTCCTGATTGTTATGCAGCCATCAT ACGTTGGCACTACGAAAATCAATCTACCACCCGATTTCTTTAGGAGCAATTTCAAAGGTAAAGATGGGGTCACCGGCCTTCGAGTTCTTGATGGAAGTGT CTGGAAAGTTGAGTACCGTGTTACCAAGGACAGAGCAATTTTTACCGCCAAATCTTGGATTCCATTTGTACGGAAGAACAGTTTGGAAGTCGGTGATGTT TGTGCATTCGAGCTGGTGCAAGGCGGCACCGAGTCTATATTCAATGTGGTCATTTTTCGGGATACCAAGGATCGAACGAATGTATCGAAACCGAAGAAAG ACCCGACATCTTCCCATGCAAGAACTGCATATGATCACATTACATGCCTGAGGAACAATGGAGTAGATAATCTGGACCTTGATCACAGAGTCAACTGGTT TTGCAGGAACAACTGTAGAAAGATATATGGTAGCCTTGCCACACTCGTGGGATTGCCTATTCCGGTTGGCATCGATGACCTTACGTGGACGTTACTAAAA TACGCGGAGTATGATGCCGAAGAAGAATCTGAATCTGTTGTTTCTGGTATTGAGGCGACTGAAGCTCAGAGTTACATGAAACGTGAGATTGCTCTTCATG GGATGCACGAATGTTTCGAGCCTCTAGAAGAATTCTGCACGGGCAGAGATATCAAATTGACTGAACTAGGAGTTGAGAGGCTGGTTCTACCTGCTGCTCC TACTGTGTTAAACACATGGACTGGTTCGTTCGGGTTCTCAAAGATGACAGATTCCGAGAGACTGCGGTTTGCAGACTCCTTTTTCTTGAACTTTCCAGGC GCTATCTTGTGTCACAAGCTATTATCTTGTGTCACAAGCTATTAA
AA sequence Show only first row Show all	>Lus10000368 pacid=23159121 polypeptide=Lus10000368 locus=Lus10000368.g ID=Lus10000368.BGIv1.0 annot-version=v1.0 MSATEIDYKTKEASRVVKLECGVVDASDVPSNDQLLSPKTREKPLLRSSQPHKLRRTTNQNSETVVCCGSGSSVVKQRKRAMTSDHTSDNQAKEAMSWRQ KPLTKAEKARVLARATATFKSENPSFLIVMQPSYVGTTKINLPPDFFRSNFKGKDGVTGLRVLDGSVWKVEYRVTKDRAIFTAKSWIPFVRKNSLEVGDV CAFELVQGGTESIFNVVIFRDTKDRTNVSKPKKDPTSSHARTAYDHITCLRNNGVDNLDLDHRVNWFCRNNCRKIYGSLATLVGLPIPVGIDDLTWTLLK YAEYDAEEESESVVSGIEATEAQSYMKREIALHGMHECFEPLEEFCTGRDIKLTELGVERLVLPAAPTVLNTWTGSFGFSKMTDSERLRFADSFFLNFPG AILCHKLLSCVTSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	0	1
					Lus10035486 [exp]	1.4	0.9252
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10039667 [exp]	1.4	0.9298
AT4G30400			RING/U-box superfamily protein...		Lus10008899 [exp]	2.4	0.9240
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10039797 [exp]	4.0	0.9077
					Lus10024122 [exp]	4.2	0.9046
AT5G06270			unknown protein		Lus10004209 [exp]	4.5	0.9168
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10041893 [exp]	4.5	0.9159
AT4G31690	B3	REM9	Transcriptional factor B3 fami...		Lus10042406 [exp]	4.9	0.8976
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	4.9	0.9144
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035896 [exp]	8.7	0.8730

Compare expression of checked genes

Lus10000368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.