Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17450 295 / 1e-88 B-block binding subunit of TFIIIC (.1.2) AT1G59077 266 / 5e-82 unknown protein AT1G58766 266 / 5e-82 unknown protein AT1G59453 265 / 2e-78 B-block binding subunit of TFIIIC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037675 [exp] 478 / 4e-153 AT1G17450 1340 / 0.0 B-block binding subunit of TFIIIC (.1.2) Lus10022088 [exp] 402 / 5e-141 AT1G17450 205 / 6e-61 B-block binding subunit of TFIIIC (.1.2) Lus10015660 [exp] 365 / 1e-125 AT1G17450 205 / 7e-60 B-block binding subunit of TFIIIC (.1.2) Lus10022089 [exp] 111 / 4e-27 AT1G59077 210 / 1e-62 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G064000 [exp] 345 / 5e-106 AT1G17450 1446 / 0.0 B-block binding subunit of TFIIIC (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000369 pacid=23149348 polypeptide=Lus10000369 locus=Lus10000369.g ID=Lus10000369.BGIv1.0 annot-version=v1.0 ATGCAGCTCATTCGACTGATACCTGTTGAGAATTCTGAAGACGGAGTCATGCTTCCACATGCATTGTTCACAGATGCAATGGAGTTTAAACCTTACATAG AAGAGCCACCAGCAATAGTTTCAAAATCTATTGATCTTCGCCCAAGATACCGGCATGATTTTGTTCTGTCAAGTAGAGAAGCTGTTGAGGACTATTGGAA GACACTGGAAATTTGTTATGCTGCTGCTGATCCAAAAGCTTCTTTTCATGCGTTCCCTGGATCTTCTGTTCCTGAGAATGTTCAAGAATTTGTATTACCA TGCACTCCGAGTGACAATGCCCAGAACCTTGGGCATGGTAAACGCAGTGAGTCGAGAAAAAGAGCAAGGCACCATAACCTTCGTCAGAAATTTATGAAGT GTTTAAATGAAAGTTCAGATGCTGGTAGAGAAGTGTATAAATCTGTTGCTGTTTCAAACGCGGTGGAGTTACTAAAGTTGGTTTTCTTGAGTTCTTCAAC AAGTCCAGACCTCCAGAACATGCTGGGAGCAACATTACGACATTACTCCGAGCACGATATTTTTACTGCCTTTAGCTATCTCAGGGATAACAAAATATTG ATTGGGGGCAATGGTGGTCCTTTTGTGCTGTCTCAGCACTTTCTGCACAACATCTCCAAGTCTCCGTTTCCTACTAATACTGGGAAAAGGGCAGCTAAGT TTTCTAATTGGCTTCAGGAAGGAAAGAATTATCTTATAGGCGGAGGCATTGATCTGAAAGAAGATTTGCAGTGTGGTGACATATTTCATTTGTTTGCTCT AGTTTCTTCTGGTGAAATGTCAGTTTCTCCATGCCTGCCCGATGAAGGTCTAGGAGAGGCTGAGGACCTAAGAAGCTCAAAACGAAAAGCCGAGCCTGAT GAACCTTGTGAAAGTGAGAAAGCTACTAAGAAAGTGAAATTCGTGCGAGACGCTGATCTTTTTTCTCGCCGGGAAAAAGGCTTTCCTGGTATAAGAGTAT CCATTTGTCGTGAAACAATCTTGCCGGTTGATGCTCTTGAACCTCTGGATGATGGCAGAAATGGTACTGATAACTCTCAGAAGGATAAAATGGAGTCTGC TTTTGTCCCAAGAGACTGCCTTGTGCCACGAAGGCCCAATTTTGATAGCATTACTCCTGCAAGATTATCTTGCCAGTCATCCTGGGAAGCCATGTCGAGC TACGCGAGTTATCTCCATTCAGATCTTTGTGCCCTGAAAGAAGAAAGTTTATTCAGTCCTAAGAGCTTCCAGGATTCCTACAAGGCAATTCATAGAGCTG GAGATCAAGGCTTGAGTTTTGAGGAAGTTTCCCAGACTCTGGACATGCTAGGTGTGTAA
AA sequence Show only first row Show all	>Lus10000369 pacid=23149348 polypeptide=Lus10000369 locus=Lus10000369.g ID=Lus10000369.BGIv1.0 annot-version=v1.0 MQLIRLIPVENSEDGVMLPHALFTDAMEFKPYIEEPPAIVSKSIDLRPRYRHDFVLSSREAVEDYWKTLEICYAAADPKASFHAFPGSSVPENVQEFVLP CTPSDNAQNLGHGKRSESRKRARHHNLRQKFMKCLNESSDAGREVYKSVAVSNAVELLKLVFLSSSTSPDLQNMLGATLRHYSEHDIFTAFSYLRDNKIL IGGNGGPFVLSQHFLHNISKSPFPTNTGKRAAKFSNWLQEGKNYLIGGGIDLKEDLQCGDIFHLFALVSSGEMSVSPCLPDEGLGEAEDLRSSKRKAEPD EPCESEKATKKVKFVRDADLFSRREKGFPGIRVSICRETILPVDALEPLDDGRNGTDNSQKDKMESAFVPRDCLVPRRPNFDSITPARLSCQSSWEAMSS YASYLHSDLCALKEESLFSPKSFQDSYKAIHRAGDQGLSFEEVSQTLDMLGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17450			B-block binding subunit of TFI...		Lus10000369 [exp]	0	1
AT4G10930			unknown protein		Lus10032402 [exp]	1.7	0.8769
AT4G38440		IYO	MINIYO, unknown protein		Lus10023985 [exp]	2.4	0.8656
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10035998 [exp]	2.8	0.8589
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	2.8	0.8730
AT1G17450			B-block binding subunit of TFI...		Lus10022088 [exp]	4.2	0.7940
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10016702 [exp]	4.5	0.8566
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	7.7	0.8505
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Lus10032287 [exp]	7.7	0.8119
AT2G36370			ubiquitin-protein ligases (.1)		Lus10035561 [exp]	12.2	0.7735
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	15.7	0.8229

Compare expression of checked genes

Lus10000369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.