Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59077 63 / 2e-12 unknown protein AT1G58766 63 / 2e-12 unknown protein AT1G59453 63 / 2e-12 B-block binding subunit of TFIIIC (.1) AT1G17450 63 / 3e-12 B-block binding subunit of TFIIIC (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022089 [exp] 277 / 3e-95 AT1G59077 210 / 1e-62 unknown protein Lus10015659 [exp] 133 / 2e-39 AT1G17450 111 / 3e-36 B-block binding subunit of TFIIIC (.1.2) Lus10037675 [exp] 138 / 1e-38 AT1G17450 1340 / 0.0 B-block binding subunit of TFIIIC (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G064000 [exp] 103 / 2e-26 AT1G17450 1446 / 0.0 B-block binding subunit of TFIIIC (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000370 pacid=23149346 polypeptide=Lus10000370 locus=Lus10000370.g ID=Lus10000370.BGIv1.0 annot-version=v1.0 ATGGTTGATTCTGTCATTGATGTGCTCCAAACGTTTGGACGAGTATTAAAGGTCAATGCTTATGACTCGGTTCGTGTTGTTGATGCTTTATATCTGACCA AGTACTCTTTGACCTCGAGGCCTTCTTTGGATAGCGATCCTAAGTCAATGTCAGAGTCATATGAGAGAAGTGAGGATGGTCAACCCGAAACTAATGAATC AGTTAACCCTAAGCCCCATGCTGCAGCAGACCAATCGATCTCGGGCGACAATGATGTGCACAAAGTTACTATTCTTAACCTTCCAGACGAGGCCGTGCCA TTGAGAGAAACACAAAGTAGAAACTCACAAGAAAGTGATGTGCAAGACCAGAACGTGATAAATATTCATGAACAACGTATTGATAGTAAAAGTTATATGC CAATCCTCCCATGA
AA sequence Show only first row Show all	>Lus10000370 pacid=23149346 polypeptide=Lus10000370 locus=Lus10000370.g ID=Lus10000370.BGIv1.0 annot-version=v1.0 MVDSVIDVLQTFGRVLKVNAYDSVRVVDALYLTKYSLTSRPSLDSDPKSMSESYERSEDGQPETNESVNPKPHAAADQSISGDNDVHKVTILNLPDEAVP LRETQSRNSQESDVQDQNVINIHEQRIDSKSYMPILP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59453			B-block binding subunit of TFI...		Lus10000370 [exp]	0	1
AT1G56140			Leucine-rich repeat transmembr...		Lus10010927 [exp]	4.1	0.8431
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040031 [exp]	6.0	0.8718
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	7.9	0.8768
AT1G32420			F-box and associated interacti...		Lus10011190 [exp]	18.6	0.8024
AT5G55060			unknown protein		Lus10021546 [exp]	21.5	0.8593
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10037784 [exp]	23.3	0.8323
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	24.9	0.8680
AT2G28085			SAUR-like auxin-responsive pro...		Lus10001397 [exp]	27.5	0.8317
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	27.7	0.8621
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	28.8	0.8479

Compare expression of checked genes

Lus10000370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.