Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57500 250 / 1e-81 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006531 [exp] 267 / 4e-90 AT5G57500 202 / 1e-64 Galactosyltransferase family protein (.1) Lus10006963 [exp] 249 / 3e-81 AT5G57500 470 / 2e-168 Galactosyltransferase family protein (.1) Lus10015527 [exp] 244 / 5e-79 AT5G57500 473 / 2e-169 Galactosyltransferase family protein (.1) Lus10019998 [exp] 243 / 6e-79 AT5G57500 475 / 3e-170 Galactosyltransferase family protein (.1) Lus10000407 [exp] 229 / 2e-75 AT5G57500 211 / 2e-68 Galactosyltransferase family protein (.1) Lus10025474 [exp] 121 / 2e-33 AT5G57500 199 / 4e-64 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G131000 [exp] 366 / 6e-127 AT5G57500 289 / 2e-96 Galactosyltransferase family protein (.1) Potri.018G094000 [exp] 254 / 1e-83 AT5G57500 493 / 3e-177 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10000372 pacid=23149351 polypeptide=Lus10000372 locus=Lus10000372.g ID=Lus10000372.BGIv1.0 annot-version=v1.0 ATGATGCGAGGAAGGAGGCGAATGGTGGTAGCAGCGCTTTCCCCATTTCTTGCTCTAGCCTTATTCTTCATTGTCTATATCTTCTTCAATATCCGGGTAA GATCTTTTCTGCTATCTTCATCATCTAACGACTCCGTTACCATCAGCAGTGGAAGGAATCTGATACAGACCAGATTCAGCCTCTTAATTGGCATCTTCAC TCGTCCCGATAGTTATGATCGTCGTCATTTCCTTCGCCTAGTCTACGGAATACAGTCATCCCCCGTAGCTGACATAGACATCAAATTTGTATTCTGCAAT CTCACAAAGCATGAACAAAGGGTGCTTGTGGGTCTAGAAATACTTCGTTTCAACGACATCATAATCCTTGACTGCACTGAGAATATGAACAATGGGAAGA CCTACACCTACTTCTCTTCGCTACCCCATATTTTGCAGCACCGTTATGACTATGTAATGAAAGCTGACGATGATGTTTACCTTAGGCTTCACCCATTGTC ATCTTCGTTATACCCATTGCCAAGGCACGATTTGTACTATGGTTTTGTTATCCCTTGCAATAGCATGAACCCGTTTGTTGAGTACATGTCAGGAATGGGG TTCTTACTGTCTTGGGCTCTTGTCCAATGGATTAGCAGCTCGAGAATTCCCGCCAATGACACACTTGGCCCCGAAGATAAGTTAGTTGGAAAATGGTTGA AAGTAGGAGGGAAAGGCAAGAACAGGTTTTCTAAGAAACCAGCCATGTACGACTATCCAGGGACCAATGGTAGGTGTTCCCATCAAGGGACCAATGGTAG GTGTTCCCACGAGCTTATACCTGAGACCATTGCAGTTCACCGGCTGAAGAAGTGGGATCAATGGCTTCATGTGCTTGAATTCTTCAATGTAACAGCAGAG CTCCAGCAGTCAAACATCCATTATCTCTACTGA
AA sequence Show only first row Show all	>Lus10000372 pacid=23149351 polypeptide=Lus10000372 locus=Lus10000372.g ID=Lus10000372.BGIv1.0 annot-version=v1.0 MMRGRRRMVVAALSPFLALALFFIVYIFFNIRVRSFLLSSSSNDSVTISSGRNLIQTRFSLLIGIFTRPDSYDRRHFLRLVYGIQSSPVADIDIKFVFCN LTKHEQRVLVGLEILRFNDIIILDCTENMNNGKTYTYFSSLPHILQHRYDYVMKADDDVYLRLHPLSSSLYPLPRHDLYYGFVIPCNSMNPFVEYMSGMG FLLSWALVQWISSSRIPANDTLGPEDKLVGKWLKVGGKGKNRFSKKPAMYDYPGTNGRCSHQGTNGRCSHELIPETIAVHRLKKWDQWLHVLEFFNVTAE LQQSNIHYLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	0	1
AT2G14255			Ankyrin repeat family protein ...		Lus10040833 [exp]	2.0	0.9330
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	3.0	0.9380
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	3.3	0.9419
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10012202 [exp]	4.9	0.9325
					Lus10040954 [exp]	5.9	0.9314
AT4G02120			CTP synthase family protein (....		Lus10025042 [exp]	7.4	0.9326
AT4G23050			PAS domain-containing protein ...		Lus10017844 [exp]	9.2	0.9233
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10029765 [exp]	10.6	0.9226
AT5G05130			DNA/RNA helicase protein (.1)		Lus10027296 [exp]	11.0	0.9389
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	11.6	0.9299

Compare expression of checked genes

Lus10000372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.