Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72640 197 / 4e-62 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016517 [exp] 337 / 1e-116 AT1G72640 309 / 3e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063800 [exp] 238 / 3e-78 AT1G72640 348 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000373 pacid=23149347 polypeptide=Lus10000373 locus=Lus10000373.g ID=Lus10000373.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCTCTTCTTACTCTTTCAACGCTTTCTCTCCCAAGTCCCCGTAACAACCCATTGCCCTCTTATGCCTTATCCACTCCCCGAAACAGGCTTC TTCCCTTCTGCTGCTCTGCCAAGAAGAAGATTGGCTTCTTTGATAAAATCCTCGACTACATCGAAGGAGGTCCCAAATTGAAGAAATGGTATGGGGCACC TCAACTCCTCCCTAAGGATGGATCTGCTCCAGACCAAGATGAGGATGGTGAACTCTCAGACAATGAAGTGAGAGATGCAATCCTAGTTGCTGATGGTGAT TCTGAGCTTGGCCAGGCATTGGTGAAGGATAAGAGAGCTGCAATGGAAGCTTTTGGGACTTATGTTAAGTCAATTGTGGGCGATGTGCAAAGCGATCCAT TTCTAAAGAAAGCTCTTCGAGGATTACAATTGTCTGTTTATAGAAGTGGCAGTGGAATTCAGTCCTTGATGACAAGCAATGCAAGAAAACTGGGAGAGCA AGATGAATCAGCAGTTATGGATTCAGGAGTCCCTTACACCATCGTCAGGACTGGGGCGTTACAGAATATATCCCGTGGAAACCAAGGTTTCAGCTTCAAG TCAAGGCAAGTTTTGCAGTATAGAATAGAGGGAGGAGCAGAAAGGTTGTACAGAGAAGGGAGTCTGAGCAAAGAGGATGCTGCATTCATTTGTGTTGAAG CTCTTGAAGTTGTCCCACAAGGAGGAGGTTTTGTCTTTGAGGTTGGAGAATGCTTTTTGACATATTCATCCATCATACTCCTAAAATGGTAA
AA sequence Show only first row Show all	>Lus10000373 pacid=23149347 polypeptide=Lus10000373 locus=Lus10000373.g ID=Lus10000373.BGIv1.0 annot-version=v1.0 MAAALLTLSTLSLPSPRNNPLPSYALSTPRNRLLPFCCSAKKKIGFFDKILDYIEGGPKLKKWYGAPQLLPKDGSAPDQDEDGELSDNEVRDAILVADGD SELGQALVKDKRAAMEAFGTYVKSIVGDVQSDPFLKKALRGLQLSVYRSGSGIQSLMTSNARKLGEQDESAVMDSGVPYTIVRTGALQNISRGNQGFSFK SRQVLQYRIEGGAERLYREGSLSKEDAAFICVEALEVVPQGGGFVFEVGECFLTYSSIILLKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	0	1
AT2G46090			Diacylglycerol kinase family p...		Lus10036388 [exp]	1.0	0.9387
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	1.4	0.9088
AT4G14385			unknown protein		Lus10011821 [exp]	2.0	0.8949
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10021337 [exp]	2.2	0.8929
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	3.3	0.8775
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10019468 [exp]	4.0	0.8608
AT3G27050			unknown protein		Lus10032042 [exp]	4.1	0.8597
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	4.2	0.9016
					Lus10039070 [exp]	5.1	0.8698
AT2G22650			FAD-dependent oxidoreductase f...		Lus10036320 [exp]	5.3	0.8928

Compare expression of checked genes

Lus10000373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.