Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17450 311 / 2e-95 B-block binding subunit of TFIIIC (.1.2) AT1G59453 284 / 6e-86 B-block binding subunit of TFIIIC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037675 [exp] 468 / 2e-150 AT1G17450 1340 / 0.0 B-block binding subunit of TFIIIC (.1.2) Lus10015661 [exp] 409 / 5e-134 AT1G17450 598 / 0.0 B-block binding subunit of TFIIIC (.1.2) Lus10006533 [exp] 184 / 3e-55 AT1G17450 101 / 1e-23 B-block binding subunit of TFIIIC (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G064000 [exp] 347 / 9e-108 AT1G17450 1446 / 0.0 B-block binding subunit of TFIIIC (.1.2) Potri.001G170001 [exp] 0 / 1 AT1G17450 75 / 2e-16 B-block binding subunit of TFIIIC (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04182 [flax] [poplar] B-block_TFIIIC B-block binding subunit of TFIIIC
Representative CDS sequence Show only first row Show all	>Lus10000374 pacid=23149350 polypeptide=Lus10000374 locus=Lus10000374.g ID=Lus10000374.BGIv1.0 annot-version=v1.0 ATGCTCTTCTCCGTCCCCCCACCGCGTTCCCGCACAAGGTCTCCTGAAATCTCACCGGCGGCCAAACGACCATCATTGTCCACATGCAGCAGTGACATGG ACGCACTAATCTCATCGGCTCTCGAGGAAATTTGCTACCGAGGTTCTTCCGGCGTGTCACTTTCTTCCATCTGGTGCAAATTAAGCCCTGCTCCATCTCC CTCCGTGAAGGCCTCTCTGTGGAGCAACCTTCTTTCAGTTCCCACCTTACAATTCAGCGTAGCAGGAAAAGATACGCCGTTCGTCCCTGATGACCCGACA ATCCAGCGCGTTGAGGATGCTGAGAAGCTGAAATTGAAGGTTGTAGCTAAGGAGCAACTTAGGGATTGTTTTGTTGGACTTTACGATGTTCCCTCATGCG GGATCAGACCTCTGCAGCGACGCGCTCTTGAACGGCTCGCCGTCGCTAGAGAAGATGGCATCACGCAAAGTCAACTAAGCAAAGAATTCGGGATGGAAGG GAGAAACTTCTTTTATATAGTGAAGAACCTTGAGAGTCGAAACTTAATTGTGAGACAACCGGCAATTGTGAAGACGATAGAAGCTGGAGCTGCTGGTGAA ATAAAAAGCTCTGTCAGTACTAATTTGATGTACTTGTCTCGCTATGCAACACGTTTAGGTGCTCAACAGAGATTTGAAATCAACAAAGAAGAACAAGCTC TTGGAAGTCTTGTTGATCTAGTAGAAGCTGATGTCGATGAAGAAACTTCTGGTGGAGATTGTTTTAAGGGTGATGTGCTTGTAAAGGACTTCATACCTGC AATGCAAGCCATTTGTGAGAAACTTGAAAGTGCCAATGGCAATGTACTTGTTATCACAGATGTAAAGAAGAATCTGGGTTACTGTGGACGTTTTGGGCAC AGAGCTTGGAGACGTATATTTCAAAAACTGAAGGATGCTGGTCTAGTTGAGGAGTTCGATGCTAAAGTAAATGACAAGGTTGAGCGTTGCATACATCTAT TGAACAAGTTTTCCCCAAAGATCTTCGAGACCAAACCACTTGGAGCTAGTTTTGCAACTCAAGATATTAGAGAGCTGAAGTTTGGACGGGGGCCTAAACT TAATGAGCNAAACTGA
AA sequence Show only first row Show all	>Lus10000374 pacid=23149350 polypeptide=Lus10000374 locus=Lus10000374.g ID=Lus10000374.BGIv1.0 annot-version=v1.0 MLFSVPPPRSRTRSPEISPAAKRPSLSTCSSDMDALISSALEEICYRGSSGVSLSSIWCKLSPAPSPSVKASLWSNLLSVPTLQFSVAGKDTPFVPDDPT IQRVEDAEKLKLKVVAKEQLRDCFVGLYDVPSCGIRPLQRRALERLAVAREDGITQSQLSKEFGMEGRNFFYIVKNLESRNLIVRQPAIVKTIEAGAAGE IKSSVSTNLMYLSRYATRLGAQQRFEINKEEQALGSLVDLVEADVDEETSGGDCFKGDVLVKDFIPAMQAICEKLESANGNVLVITDVKKNLGYCGRFGH RAWRRIFQKLKDAGLVEEFDAKVNDKVERCIHLLNKFSPKIFETKPLGASFATQDIRELKFGRGPKLNEXN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17450			B-block binding subunit of TFI...		Lus10000374 [exp]	0	1
AT5G15680			ARM repeat superfamily protein...		Lus10035142 [exp]	3.3	0.9650
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016882 [exp]	4.9	0.9604
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	6.7	0.9555
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039423 [exp]	9.8	0.9073
AT1G77800			PHD finger family protein (.1....		Lus10009785 [exp]	11.5	0.9435
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10033980 [exp]	11.6	0.9540
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	13.2	0.9509
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	14.1	0.9530
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	14.7	0.9551
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	16.4	0.9368

Compare expression of checked genes

Lus10000374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.