Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35420 147 / 1e-44 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016930 [exp] 214 / 2e-69 AT1G35420 214 / 2e-66 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079000 [exp] 150 / 1e-45 AT1G35420 332 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.013G105634 [exp] 40 / 0.0002 AT1G35420 89 / 2e-20 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01738 [flax] [poplar] DLH Dienelactone hydrolase family
Representative CDS sequence Show only first row Show all	>Lus10000375 pacid=23157143 polypeptide=Lus10000375 locus=Lus10000375.g ID=Lus10000375.BGIv1.0 annot-version=v1.0 ATGTCGGACGAATTCCTGGCAGCTGGAATCTCCAAGAAGCTGGGGTTGATCGGATTCTGCTACGGCGGTGGCAGAGTAGTAGAAGTTCTGTCCAGAGATC AGGGCAACCGGTTCGGGATTGGGATCTCATTCTACGGTACTAGAATCGACACAAGCCTTGTTAGGAAGTTAAGTGCCCCAGTCCTGTTTGTTTCAGGGGA CAGTGACCCTCTTTGCAGCTTGAGTGTACTCAAGGAGATTGAGAACAAAATTGGCGAGGACAGCAATTCGAAAGTGGTTATCTTCGAAGGAAGAGGTCAC GTGTTCGCACACCGCCCGAGTTCTGCTGAAGAAGATGAAGATGCAGAGGAGGCTTTTGTGATGCTGAGGAGTTGGTTGAATGATGGTTTTGTGGTGGAGA GTTGA
AA sequence Show only first row Show all	>Lus10000375 pacid=23157143 polypeptide=Lus10000375 locus=Lus10000375.g ID=Lus10000375.BGIv1.0 annot-version=v1.0 MSDEFLAAGISKKLGLIGFCYGGGRVVEVLSRDQGNRFGIGISFYGTRIDTSLVRKLSAPVLFVSGDSDPLCSLSVLKEIENKIGEDSNSKVVIFEGRGH VFAHRPSSAEEDEDAEEAFVMLRSWLNDGFVVES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10000375 [exp]	0	1
AT3G50120			Plant protein of unknown funct...		Lus10009871 [exp]	2.2	0.8689
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10022612 [exp]	4.2	0.8416
AT4G33940			RING/U-box superfamily protein...		Lus10012062 [exp]	5.8	0.8507
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10004948 [exp]	7.7	0.8326
AT4G22250			RING/U-box superfamily protein...		Lus10035335 [exp]	9.2	0.8407
					Lus10011351 [exp]	9.6	0.8102
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10037412 [exp]	9.8	0.8482
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10011495 [exp]	10.2	0.8370
					Lus10008223 [exp]	12.0	0.8174
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	12.2	0.8491

Compare expression of checked genes

Lus10000375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.