Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10000377 pacid=23165396 polypeptide=Lus10000377 locus=Lus10000377.g ID=Lus10000377.BGIv1.0 annot-version=v1.0 ATGGGGACGAACGTTGCAGAGGGAATCGTTGTGACGAGGTCGGAAACTCTGCCAGATCTGAAAAAAACGATAGACGGAGCCCCCTTACCACCCTACCCGG GGATGATCAGGAGGAGGAGGTTCTTGAGGACATACGATTGTGTTCCTCGCCTGGTATCCGTAGGACCAGCCTACCAGGTTGAGGGTTTTGATAAGCTGTA TTTTGCAAAGTATGTAGTGGATAAAACAGAATTGCAATCAATGAAGTTTCTTGAAGAGGTGTCAAATTCATTACATGAATCGAGGGAAGTTATCGAAAAG CACTACGCCGTTGATGTAAGTTCAAAAAACCTCTTGATCGATGGATTGTTTCTCCTTGGTCTGTTTTTGAAGAAACTACAAAAAGAACATATAGCCATGG AAATAGGTATTCTTGATGCCCTGCGGCTAGACTTGCTATGCTATGGAAATCAGTTGCCATGGAAGGTTGTGGAAATGATATGGAGTTGTTTTGAGAAGTA TAATGTGGATACCAACATAACGATAACTTTGCACCGACTGGTGACTTCTTTGTTGAGTGGATTGACGGTCTCAGTATAG
AA sequence Show only first row Show all	>Lus10000377 pacid=23165396 polypeptide=Lus10000377 locus=Lus10000377.g ID=Lus10000377.BGIv1.0 annot-version=v1.0 MGTNVAEGIVVTRSETLPDLKKTIDGAPLPPYPGMIRRRRFLRTYDCVPRLVSVGPAYQVEGFDKLYFAKYVVDKTELQSMKFLEEVSNSLHESREVIEK HYAVDVSSKNLLIDGLFLLGLFLKKLQKEHIAMEIGILDALRLDLLCYGNQLPWKVVEMIWSCFEKYNVDTNITITLHRLVTSLLSGLTVSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000377 [exp]	0	1
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	1.0	0.9201
					Lus10039418 [exp]	1.7	0.8535
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10041926 [exp]	5.3	0.8576
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10011112 [exp]	5.3	0.8490
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10039171 [exp]	7.5	0.7849
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10029577 [exp]	8.1	0.6804
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10017678 [exp]	8.5	0.6647
AT1G17100			SOUL heme-binding family prote...		Lus10001247 [exp]	8.8	0.6622
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	8.9	0.8322
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	11.2	0.8129

Compare expression of checked genes

Lus10000377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.