Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12080 145 / 3e-41 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT5G62260 126 / 1e-33 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 126 / 1e-33 AT-hook AT hook motif DNA-binding family protein (.1) AT4G22770 120 / 1e-31 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 117 / 7e-31 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 111 / 6e-28 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 106 / 1e-26 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT3G61310 94 / 6e-22 AT-hook AT hook motif DNA-binding family protein (.1) AT5G46640 93 / 2e-21 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 92 / 4e-21 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007003 [exp] 328 / 3e-113 AT4G12080 197 / 6e-61 AT-hook motif nuclear-localized protein 1 (.1) Lus10004318 [exp] 152 / 7e-44 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10000177 [exp] 124 / 3e-36 AT4G12080 42 / 6e-06 AT-hook motif nuclear-localized protein 1 (.1) Lus10031118 [exp] 125 / 1e-34 AT4G25320 231 / 2e-74 AT hook motif DNA-binding family protein (.1) Lus10004022 [exp] 128 / 2e-34 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10031696 [exp] 128 / 2e-34 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10030269 [exp] 127 / 3e-34 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10015027 [exp] 121 / 3e-32 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 119 / 2e-31 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G115800 [exp] 172 / 7e-52 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 153 / 2e-44 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G116500 [exp] 153 / 2e-44 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 150 / 2e-43 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.012G129500 [exp] 138 / 2e-38 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.002G158200 [exp] 117 / 2e-30 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.014G082100 [exp] 116 / 2e-30 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G005000 [exp] 112 / 2e-28 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.001G143500 [exp] 108 / 6e-27 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.005G256500 [exp] 108 / 8e-27 AT2G33620 196 / 2e-59 AT hook motif DNA-binding family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10000381 pacid=23159282 polypeptide=Lus10000381 locus=Lus10000381.g ID=Lus10000381.BGIv1.0 annot-version=v1.0 ATGCCTATGACCGAGGAAGTTCCGGCGAAGAAAAAGCGAGGGAGGCCGAGGAAGTACAACCCAGATGGGAGTCTTGCGACCTCGGCTCGCTCCAAGAAAC CGATTTCCACCGCTGGGTCGGCTCCGCCGCCGTTGGTTGATTTCTCGTCTGGGAAGCGGCCCAGACTGAATGAGCCTGAGGAAGAGTTGACTTATGGTGA GCTCGCTGACGAATTCGTGCCGGCGAATGAATGTGTTACTCGCTCCGTCAGCAACAATTTCACTACTCATGTGCTTAGGGTTGATTCCGGGCAGGATATT CTGATGCATATCATGGGATTTATTCACCAAGGGCCTCGAGCTATATGCGTGCTCTCTGCAAATGGTTTTGTCTCGGCTGTCACCCTTCGTCTTAATACTG CCGGGACTACTATAACTTATGATGGACACTTCGAGTTAATCTCGTTGACCGGTTCTTTTGTGCCTACAAAAAACGGGGCGACGGGGAAGAGAAGCGGTGC GATGAGCGTGTCGTTTGTCGATTCAAAGGGGATTGTAGCTGGTGGTGGCGTCGCTGGCAGGGTAGTTGCTGCTGCTCCTGTGGAGGTTGTGGTAGCCAGT TTTCTGCCCGGGGACCGGTACTTGCATGAGCCGAAGAAGGAGCAGAACAATGACGACTCCTTCACTGCAACAACCCCTCCCGGATTTGCAGCAACCCCAC CAGGATTTCAGACCCCATATCCGTTGCTGACCCGAATGCCGGAACTTCATCCCAGTTTCAAGAGGGCAATCAGTATAGCACTCCGAGCGGTTCGAGGAGT AAGCAAGCCAAGATTGTTGTGCTTGATGATTGAGCTGATCAACAGATTATTATAA
AA sequence Show only first row Show all	>Lus10000381 pacid=23159282 polypeptide=Lus10000381 locus=Lus10000381.g ID=Lus10000381.BGIv1.0 annot-version=v1.0 MPMTEEVPAKKKRGRPRKYNPDGSLATSARSKKPISTAGSAPPPLVDFSSGKRPRLNEPEEELTYGELADEFVPANECVTRSVSNNFTTHVLRVDSGQDI LMHIMGFIHQGPRAICVLSANGFVSAVTLRLNTAGTTITYDGHFELISLTGSFVPTKNGATGKRSGAMSVSFVDSKGIVAGGGVAGRVVAAAPVEVVVAS FLPGDRYLHEPKKEQNNDDSFTATTPPGFAATPPGFQTPYPLLTRMPELHPSFKRAISIALRAVRGVSKPRLLCLMIELINRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000381 [exp]	0	1
AT1G18530			EF hand calcium-binding protei...		Lus10027243 [exp]	2.0	0.8271
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000177 [exp]	2.2	0.7830
					Lus10003030 [exp]	4.0	0.8163
AT1G18530			EF hand calcium-binding protei...		Lus10038953 [exp]	4.1	0.7239
AT5G61000		ATRPA70D	Replication factor-A protein 1...		Lus10003025 [exp]	4.7	0.8680
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10000017 [exp]	6.0	0.7378
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10020212 [exp]	7.1	0.6738
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10016287 [exp]	7.5	0.8227
					Lus10030116 [exp]	9.4	0.7433
AT3G59650			mitochondrial ribosomal protei...		Lus10022178 [exp]	9.5	0.7550

Compare expression of checked genes

Lus10000381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.