Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54210 245 / 2e-82 Ribosomal protein L17 family protein (.1) AT5G09770 108 / 1e-29 Ribosomal protein L17 family protein (.1) AT5G64650 107 / 5e-29 Ribosomal protein L17 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007002 [exp] 410 / 1e-147 AT3G54210 244 / 2e-82 Ribosomal protein L17 family protein (.1) Lus10006999 [exp] 404 / 8e-144 AT3G54210 248 / 1e-82 Ribosomal protein L17 family protein (.1) Lus10035729 [exp] 117 / 8e-33 AT5G09770 271 / 6e-95 Ribosomal protein L17 family protein (.1) Lus10037314 [exp] 115 / 7e-32 AT5G09770 274 / 6e-96 Ribosomal protein L17 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G113500 [exp] 267 / 7e-91 AT3G54210 253 / 1e-85 Ribosomal protein L17 family protein (.1) Potri.016G143100 [exp] 245 / 4e-82 AT3G54210 258 / 7e-88 Ribosomal protein L17 family protein (.1) Potri.007G107100 [exp] 112 / 8e-31 AT5G64650 258 / 1e-89 Ribosomal protein L17 family protein (.1) Potri.005G061700 [exp] 108 / 3e-29 AT5G64650 257 / 4e-89 Ribosomal protein L17 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01196 [flax] [poplar] Ribosomal_L17 Ribosomal protein L17
Representative CDS sequence Show only first row Show all	>Lus10000382 pacid=23159280 polypeptide=Lus10000382 locus=Lus10000382.g ID=Lus10000382.BGIv1.0 annot-version=v1.0 ATGCTGGCGACGGCCGGAGTTTGTGACACCAGATGGAGCATGGTTTCCTTACGGTCAGCGCTCCCTGTTCTTCCTTATTCGCCTCCGACGGCCGTCAATC TTCGACTCCACTCCTCCCGCGCTACAGCTCTCTCCGCCATCGACACCAGATGGAGCATGGTTTCCTTACGGTCAGCGCTCCCTGTTCTTCCTTATTCGCC TCCGACGGCCGTCAATCTTCGACTCCAATCCTCCCGCACTAAAGCTATCTCCGTCAGTCGTTTACAAACTCACTCTTTCCGCTCCTTAGCTGGAATTCCT CTTCTAGATCCTCTGCATTCTTCACTTCGCTTCACCGAGCCTGCCGAGAGCCATCGGTTCCCTTCCTCGGTGGACAATGGATCGCGGTTCTTCGCCATGA GACACGGCAGGAAAGTTGCCAGGCTGAACCGGCCACCGGACCAGCGAAAGGCCCTCCTGAGAGCGCTAACTACGCAACTACTAAAGCACGGCCGGATCAA GACCACCAGAGCTCGTGCTAGCGGCATGAGGAAGTTTGTGGACAAGATGATCACTCTAGCCAAGGACGGGTCGCTTCATAAGAGGAGACAGGCTCTGGGA TTCATATACGAGAAGCAGATCGTGCACGCCTTGTTCGCAGAGGTTCAGGAGAGATACGGGGAGAGGAACGGTGGGTACACGAGGATCATCAGGACTTTGC CGAGGCGTGGAGACAATGCTCCCATGGCGTACATTGAACTTGTATGA
AA sequence Show only first row Show all	>Lus10000382 pacid=23159280 polypeptide=Lus10000382 locus=Lus10000382.g ID=Lus10000382.BGIv1.0 annot-version=v1.0 MLATAGVCDTRWSMVSLRSALPVLPYSPPTAVNLRLHSSRATALSAIDTRWSMVSLRSALPVLPYSPPTAVNLRLQSSRTKAISVSRLQTHSFRSLAGIP LLDPLHSSLRFTEPAESHRFPSSVDNGSRFFAMRHGRKVARLNRPPDQRKALLRALTTQLLKHGRIKTTRARASGMRKFVDKMITLAKDGSLHKRRQALG FIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	0	1
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10030298 [exp]	1.0	0.9611
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10000959 [exp]	3.5	0.9560
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10018192 [exp]	4.2	0.9598
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	4.5	0.9579
AT3G15190			chloroplast 30S ribosomal prot...		Lus10041925 [exp]	4.5	0.9569
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10035863 [exp]	5.9	0.9527
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	6.3	0.9604
AT3G08740			elongation factor P (EF-P) fam...		Lus10022740 [exp]	8.5	0.9498
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10000897 [exp]	8.9	0.9407
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	8.9	0.9519

Compare expression of checked genes

Lus10000382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.