Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12390 140 / 8e-44 Cornichon family protein (.1) AT1G62880 130 / 1e-39 Cornichon family protein (.1.2) AT1G12340 127 / 1e-38 Cornichon family protein (.1) AT4G12090 120 / 8e-36 Cornichon family protein (.1) AT3G12180 96 / 7e-26 Cornichon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007000 [exp] 176 / 2e-57 AT1G12390 176 / 3e-57 Cornichon family protein (.1) Lus10006997 [exp] 176 / 2e-57 AT1G12390 176 / 3e-57 Cornichon family protein (.1) Lus10028906 [exp] 167 / 4e-54 AT1G12390 207 / 2e-70 Cornichon family protein (.1) Lus10004320 [exp] 149 / 3e-46 AT1G12390 173 / 1e-55 Cornichon family protein (.1) Lus10009295 [exp] 112 / 8e-33 AT1G12390 142 / 7e-45 Cornichon family protein (.1) Lus10015866 [exp] 100 / 4e-28 AT1G12390 128 / 1e-39 Cornichon family protein (.1) Lus10004023 [exp] 91 / 6e-24 AT1G12340 101 / 5e-30 Cornichon family protein (.1) Lus10030270 [exp] 82 / 5e-21 AT1G12390 94 / 2e-26 Cornichon family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116100 [exp] 162 / 2e-52 AT1G12390 184 / 3e-61 Cornichon family protein (.1) Potri.003G116400 [exp] 149 / 4e-47 AT1G12390 182 / 2e-60 Cornichon family protein (.1) Potri.002G148500 [exp] 88 / 4e-23 AT1G12390 106 / 9e-31 Cornichon family protein (.1) Potri.006G057300 [exp] 81 / 3e-20 AT3G12180 109 / 3e-31 Cornichon family protein (.1) Potri.016G051000 [exp] 79 / 2e-19 AT3G12180 142 / 4e-44 Cornichon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03311 [flax] [poplar] Cornichon Cornichon protein
Representative CDS sequence Show only first row Show all	>Lus10000384 pacid=23159279 polypeptide=Lus10000384 locus=Lus10000384.g ID=Lus10000384.BGIv1.0 annot-version=v1.0 ATGGCCTTCTACTTCGTTATCGCCCTAATCTTCATCGTCATCTTCCAGCTTATTTCCTTGGCCGATTTGGAGTCTGATTACATCAACCCTTACGACTCTT CATCAAGGATCAACAAAGCGATTTTTCCAGAGTACATCACCGGAGCAGCTTTGTGCTTCTTTTTCCTTGTGACTGGCCATTGGTGTATGGCACTTTTGTG CGCTCCTTACCTTTACTACAATGTCCGCCTTTACATGCGAAGGCAGCATCTGATAGACGTGACCGAGGTTTTCAACTTGTTACGTGGTGAAATGCACCAA CGATTATATAAGTTGGGTTATCTCATCCTCCTCCTTTTCCTAGCTATATTCTGGTATGTCAATGCTTGTTTCCCATCCTTCTTCTCGTCAAACAACGTTG AATCTAAGCTTGATGTGCTCTCATTTTCCGCTCTGTAG
AA sequence Show only first row Show all	>Lus10000384 pacid=23159279 polypeptide=Lus10000384 locus=Lus10000384.g ID=Lus10000384.BGIv1.0 annot-version=v1.0 MAFYFVIALIFIVIFQLISLADLESDYINPYDSSSRINKAIFPEYITGAALCFFFLVTGHWCMALLCAPYLYYNVRLYMRRQHLIDVTEVFNLLRGEMHQ RLYKLGYLILLLFLAIFWYVNACFPSFFSSNNVESKLDVLSFSAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12390			Cornichon family protein (.1)		Lus10000384 [exp]	0	1
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10035686 [exp]	2.2	0.8527
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10022337 [exp]	11.9	0.8501
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	18.4	0.8405
AT2G34930			disease resistance family prot...		Lus10016341 [exp]	21.9	0.8017
AT5G27950			P-loop containing nucleoside t...		Lus10033849 [exp]	31.6	0.8369
AT3G44590			60S acidic ribosomal protein f...		Lus10026712 [exp]	41.1	0.7735
AT5G06350			ARM repeat superfamily protein...		Lus10004194 [exp]	46.4	0.8083
AT4G27300			S-locus lectin protein kinase ...		Lus10014000 [exp]	47.8	0.7541
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10000944 [exp]	50.5	0.7930
AT4G26310			elongation factor P (EF-P) fam...		Lus10007884 [exp]	52.2	0.8271

Compare expression of checked genes

Lus10000384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.