Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27830 109 / 1e-30 unknown protein AT4G22758 56 / 4e-10 unknown protein AT5G37730 44 / 6e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006996 [exp] 195 / 1e-64 AT2G27830 100 / 6e-27 unknown protein Lus10020544 [exp] 87 / 5e-22 AT2G27830 181 / 3e-58 unknown protein Lus10009391 [exp] 67 / 2e-13 AT2G27830 130 / 7e-36 unknown protein Lus10000386 [exp] 51 / 4e-08 AT4G22758 139 / 2e-40 unknown protein Lus10017628 [exp] 46 / 1e-06 AT5G37730 102 / 3e-28 unknown protein Lus10015082 [exp] 45 / 4e-06 AT2G27830 64 / 3e-13 unknown protein Lus10006995 [exp] 39 / 0.0003 AT4G22758 110 / 9e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116300 [exp] 128 / 3e-38 AT2G27830 125 / 2e-36 unknown protein Potri.004G188600 [exp] 95 / 7e-25 AT2G27830 160 / 5e-50 unknown protein Potri.009G149200 [exp] 89 / 2e-22 AT2G27830 183 / 6e-59 unknown protein Potri.003G116200 [exp] 68 / 4e-14 AT4G22758 131 / 5e-37 unknown protein Potri.001G116200 [exp] 60 / 3e-11 AT4G22758 117 / 5e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000385 pacid=23159283 polypeptide=Lus10000385 locus=Lus10000385.g ID=Lus10000385.BGIv1.0 annot-version=v1.0 ATGTCATCATCATATCAGCAAGGCACCGGCGGAAGTAGCGGCGGCGGCGGAGGAGGTGGCGGAGGGAGGCTGACGAAGCTACTGGTGAATGTGAGGATAG AGAGGAGCTTAGGACCCGTGCAGGTGATTATGTCGCCGGAGAATCGTGTCAGGGACTGTATTAAGGCGGCGGTCGACATTTACGTGGCGGAGAAGCGGCG GCCATTCTTGGAGGAGACTGATCCTCGTCGGTTTCAGCTCCATTACTCGCAATTCACTTTCGAGAGTTTGGATGAAGAAGAGAAGTTGGCAAACTTAGAA TCGAGGAGTTTCTTCATGTGTTCATCGGAGAGGTCGTCGCCGACTTATAGTAGCACGTCATCGTCGACAACACTCTATTCGTTGCATGGATCTGAAGCCA AAACGGTGTCGTTCAAGTCTTCCGATTTACCATCCGCAAAGTGGACAGAGTTCTTGCTCTAG
AA sequence Show only first row Show all	>Lus10000385 pacid=23159283 polypeptide=Lus10000385 locus=Lus10000385.g ID=Lus10000385.BGIv1.0 annot-version=v1.0 MSSSYQQGTGGSSGGGGGGGGGRLTKLLVNVRIERSLGPVQVIMSPENRVRDCIKAAVDIYVAEKRRPFLEETDPRRFQLHYSQFTFESLDEEEKLANLE SRSFFMCSSERSSPTYSSTSSSTTLYSLHGSEAKTVSFKSSDLPSAKWTEFLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27830			unknown protein		Lus10000385 [exp]	0	1
AT2G27830			unknown protein		Lus10006996 [exp]	1.0	0.9441
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040787 [exp]	3.5	0.8128
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Lus10030147 [exp]	8.9	0.7961
AT3G11210			SGNH hydrolase-type esterase s...		Lus10004815 [exp]	19.5	0.7733
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	19.8	0.7813
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Lus10009289 [exp]	21.2	0.7816
AT3G50160			Plant protein of unknown funct...		Lus10038339 [exp]	25.4	0.7442
					Lus10007298 [exp]	34.6	0.7841
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	38.2	0.7241
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	40.6	0.7462

Compare expression of checked genes

Lus10000385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.