Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22758 132 / 8e-38 unknown protein AT2G27830 52 / 3e-08 unknown protein AT1G70780 40 / 0.0003 unknown protein AT1G23150 40 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006995 [exp] 202 / 4e-67 AT4G22758 110 / 9e-31 unknown protein Lus10020544 [exp] 64 / 4e-12 AT2G27830 181 / 3e-58 unknown protein Lus10039287 [exp] 51 / 7e-08 AT1G70780 104 / 4e-29 unknown protein Lus10000385 [exp] 50 / 1e-07 AT2G27830 110 / 5e-31 unknown protein Lus10027525 [exp] 50 / 2e-07 AT1G70780 104 / 3e-29 unknown protein Lus10017628 [exp] 49 / 4e-07 AT5G37730 102 / 3e-28 unknown protein Lus10009391 [exp] 47 / 6e-06 AT2G27830 130 / 7e-36 unknown protein Lus10034416 [exp] 41 / 0.0002 AT1G70780 168 / 8e-55 unknown protein Lus10035084 [exp] 41 / 0.0002 AT1G70780 171 / 7e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116200 [exp] 151 / 6e-45 AT4G22758 131 / 5e-37 unknown protein Potri.001G116200 [exp] 135 / 3e-39 AT4G22758 117 / 5e-32 unknown protein Potri.009G149200 [exp] 58 / 3e-10 AT2G27830 183 / 6e-59 unknown protein Potri.004G188600 [exp] 58 / 4e-10 AT2G27830 160 / 5e-50 unknown protein Potri.003G116300 [exp] 53 / 2e-08 AT2G27830 125 / 2e-36 unknown protein Potri.010G110800 [exp] 39 / 0.0005 AT1G70780 188 / 9e-63 unknown protein Potri.008G131600 [exp] 39 / 0.0005 AT1G70780 183 / 2e-60 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000386 pacid=23159278 polypeptide=Lus10000386 locus=Lus10000386.g ID=Lus10000386.BGIv1.0 annot-version=v1.0 ATGCCGGAGAAAACCCGCCGCCGCCGACGACCTCCCACAACCCGAAACTGCACCAAACCACCAAACCCATATTCTCCCCGCCGCCGCAGACGGCAACCAT CTCCGCCTCTTCACAAGCTCTCCCGATCGGCCTCCGAACCCATCATCCGACTAAACACCGAAGTTGCTGATCCTCTTCCACAATTCCATCTCCCAAAACA GGGGAACCAGATCAGTAGCAGCTTCACTTGCCTCGAGAATTTCTCCTCGTCTCCTTCTCTGCCCGGATTGAGCAGTTTCGATGGGTACTCGACGGATGCG AAGGTGGTGGTGAGCGTGACGGTGGAAGGGAGCCCAGGTCCGGTGAGGACGATGGTGAAGCTTGGATCCACCGTCGAGGACACGATCAAGCTCGTGGTTA ACAAGTACTCCGAAGAAGGAAGAACCCCAAAGCTTCATAGTCCTGATCATCATCATCATCATCATCCGTCGGCTTCTTACGAATTGCATCAATCCCACTT CAGTCTCCGATGTTTGGAGAAGTCGGAATTGATCGGGGAAGCAGGGAGCAGGAGTTTCTACCTAAGGAGAAGCAACGGTTCGCCGGAGGCTATGATGGTT CCGCCGCCGGCGATGTTCCCGTTGCAGAGTTTCTTCACGGGGAAGTTTAGTAAAGTCGTGAGGAGGACGCGTAAGCTGTTGAATATGCTGGTTTGTTTGC CGTAA
AA sequence Show only first row Show all	>Lus10000386 pacid=23159278 polypeptide=Lus10000386 locus=Lus10000386.g ID=Lus10000386.BGIv1.0 annot-version=v1.0 MPEKTRRRRRPPTTRNCTKPPNPYSPRRRRRQPSPPLHKLSRSASEPIIRLNTEVADPLPQFHLPKQGNQISSSFTCLENFSSSPSLPGLSSFDGYSTDA KVVVSVTVEGSPGPVRTMVKLGSTVEDTIKLVVNKYSEEGRTPKLHSPDHHHHHHPSASYELHQSHFSLRCLEKSELIGEAGSRSFYLRRSNGSPEAMMV PPPAMFPLQSFFTGKFSKVVRRTRKLLNMLVCLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22758			unknown protein		Lus10000386 [exp]	0	1
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10028426 [exp]	1.7	0.9205
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10016411 [exp]	2.0	0.8995
					Lus10022031 [exp]	5.5	0.8906
					Lus10029977 [exp]	10.1	0.9090
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	11.0	0.8929
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10012578 [exp]	11.2	0.8780
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	14.5	0.9015
					Lus10000510 [exp]	15.2	0.8732
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014461 [exp]	18.5	0.8266
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	19.3	0.8642

Compare expression of checked genes

Lus10000386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.