Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47040 248 / 6e-75 Glycosyl hydrolase family protein (.1.2) AT3G47000 244 / 4e-74 Glycosyl hydrolase family protein (.1) AT3G47010 234 / 5e-70 Glycosyl hydrolase family protein (.1.2) AT3G47050 232 / 2e-69 Glycosyl hydrolase family protein (.1.2) AT5G04885 192 / 6e-54 Glycosyl hydrolase family protein (.1) AT5G20940 178 / 4e-49 Glycosyl hydrolase family protein (.1) AT5G20950 171 / 2e-46 Glycosyl hydrolase family protein (.1.2) AT3G62710 149 / 1e-38 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005871 [exp] 325 / 6e-105 AT3G47000 908 / 0.0 Glycosyl hydrolase family protein (.1) Lus10001200 [exp] 327 / 1e-99 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Lus10010657 [exp] 192 / 3e-54 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 190 / 1e-53 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 190 / 1e-53 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 189 / 3e-53 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 183 / 7e-51 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 182 / 2e-50 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10007547 [exp] 171 / 2e-49 AT3G47040 362 / 7e-122 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G042800 [exp] 264 / 2e-81 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.008G013700 [exp] 197 / 2e-56 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 194 / 4e-55 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.005G059200 [exp] 184 / 1e-54 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G153900 [exp] 190 / 1e-53 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 189 / 4e-53 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 188 / 1e-52 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 151 / 5e-43 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 82 / 2e-17 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10000391 pacid=23170979 polypeptide=Lus10000391 locus=Lus10000391.g ID=Lus10000391.BGIv1.0 annot-version=v1.0 ATGGCGGCGATTTTTGCTAGCCATGCTCCAGATTTTGCTGATGACAACCACACCATTCGGGATTACTCCGACGGCGACGATGAGCAGATCCCGTCTAACG GTGATACCGATGATGATGAGGATTGTGATGCCTCGTTTAGCCCTTTCTTGTTGGACAATGCACGCTCGCGGAAGAGAGCACCAGGGAGAGGTGCAGCCGC TCCATCTTGCTCTGGAGCGGGTACTAGATCCTCTCGTGGGTCACAGGGCTCGTCTACTATGGGGCATAGGCGGGGCAGAGTAGGGCGTTCTGCAGGGGTC CACTCGAGCAGCACCGGTGGGGAGTGGTTGCTTACTGGTCCAGCTCCCAGAGGACCCCTGATCCCTACTGTGATCCCTAGTTTCGGTGGTCACATAGCCC ACCGCATCTGGACGCAGGATTTAGACTCGAGGCCGACATCATGGTTCAGACTCCGTCTTTCGAAGGCTAGGGTCATGAGGCTGGAGAGGTTCCGGTGGCC TTCCGCTGAGGCACGGCAGCTGGTCGATGCCTATAGGGTGTCGCACCTTGGTCGTACCTCGACTGTACACACCCCCAGATCGTCCCCACCCGTGCACCTG ATATGCCACATCCCCCTATGGTTCGCTCTGAAGCAGGATATGCGATCTTACTGCGCTGGGATGGCCCCCTTGTATGGGTCAGGTGGTAGGGCCCAGTTCA TTGAGCGGGCGGGAGAGTACTATGATATCGTTGAGGGCATGGCGGGTTGTGGTCTCAGGGAGATATCAACAGCCAGGATTGATGATGCTGTTCAAAGAAT ACTCAGAGTGAAGTTCATTGCTGGTCTATTTGAACATTCCTTTTATTATAGGTCTTTACTAGAGAGAGTTGGTTGCAGGCTACACAGAGACTTGGCACAG GAAGCAGTCCGTAAATCGTTGGTTCTACTGAAAAATGGCAAGGATTCAAAGAAACCGTTGCTCCCATTGGACAAGAAGGCTACAAAGATACTTGTAGCAA AGACTCATGCTGATAATCTTGGATATCAGTGCGGAGGATGGACCATAGCTTGGTACGGGTTAGACGGCAGGATTACCATTGGAAAGCAGTGGGAGAGAAC ACAGAAGTCGTCTTCGAGAAAATATCTTTCACAGGAAACTTTAGCACGTAAGGACTTCTCCTACGCCATTGTAGCCATTGGTGAACCTCCGTATGCAGAA TTCGCAGGAGACGATCCAGAGCTAGTGATCCAAATAGAAGGACGTGAGATTGTCAGCTTGGTAGCTGAGAGAATCCCCACACTGGCGATTCTTGTATCTG GAGGAACACTAGTCCTGGAATCCCATTTACTGGAGAAGATAGAAGCACTTGTTGCTACCTGGTTGCCTGGAACTGAAGGGGATGGGATTACGGATGTTAT CTTTGGAGGAGGTGACATCGTTCAAGAAGGTTGA
AA sequence Show only first row Show all	>Lus10000391 pacid=23170979 polypeptide=Lus10000391 locus=Lus10000391.g ID=Lus10000391.BGIv1.0 annot-version=v1.0 MAAIFASHAPDFADDNHTIRDYSDGDDEQIPSNGDTDDDEDCDASFSPFLLDNARSRKRAPGRGAAAPSCSGAGTRSSRGSQGSSTMGHRRGRVGRSAGV HSSSTGGEWLLTGPAPRGPLIPTVIPSFGGHIAHRIWTQDLDSRPTSWFRLRLSKARVMRLERFRWPSAEARQLVDAYRVSHLGRTSTVHTPRSSPPVHL ICHIPLWFALKQDMRSYCAGMAPLYGSGGRAQFIERAGEYYDIVEGMAGCGLREISTARIDDAVQRILRVKFIAGLFEHSFYYRSLLERVGCRLHRDLAQ EAVRKSLVLLKNGKDSKKPLLPLDKKATKILVAKTHADNLGYQCGGWTIAWYGLDGRITIGKQWERTQKSSSRKYLSQETLARKDFSYAIVAIGEPPYAE FAGDDPELVIQIEGREIVSLVAERIPTLAILVSGGTLVLESHLLEKIEALVATWLPGTEGDGITDVIFGGGDIVQEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47040			Glycosyl hydrolase family prot...		Lus10000391 [exp]	0	1
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	4.2	0.9483
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10039859 [exp]	6.0	0.9483
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014079 [exp]	7.1	0.6983
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	7.3	0.9483
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	8.5	0.9483
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	9.5	0.9483
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	10.4	0.9483
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	11.2	0.9483
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	12.0	0.9483
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10038657 [exp]	12.7	0.9483

Compare expression of checked genes

Lus10000391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.