Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60930 1271 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 554 / 4e-178 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 545 / 2e-174 KICP-02 ATP binding microtubule motor family protein (.1) AT2G36200 249 / 5e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G45850 243 / 9e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 241 / 4e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 241 / 4e-65 ATP binding microtubule motor family protein (.1) AT3G19050 241 / 4e-64 POK2 phragmoplast orienting kinesin 2 (.1) AT3G44050 237 / 2e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 232 / 3e-63 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000762 [exp] 2155 / 0 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018731 [exp] 579 / 0 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024805 [exp] 574 / 0 AT5G47820 1599 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010047 [exp] 573 / 0 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 249 / 1e-67 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 246 / 1e-66 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 243 / 1e-65 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010441 [exp] 241 / 7e-65 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021340 [exp] 240 / 7e-65 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106000 [exp] 1431 / 0 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 1400 / 0 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G024700 [exp] 583 / 0 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 565 / 0 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G046700 [exp] 551 / 6e-177 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 256 / 7e-70 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 250 / 4e-68 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 245 / 1e-66 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 244 / 4e-66 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 244 / 4e-66 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10000392 pacid=23170849 polypeptide=Lus10000392 locus=Lus10000392.g ID=Lus10000392.BGIv1.0 annot-version=v1.0 ATGGATAGCAACACGGAATGTGTCAAACTCGCAGTCAATATTCGTCCTCTCATTACTCCAGAGCTTCTAAATGGATGTACTGACTGTATCACTCTCGTTC CCGGAGAACCTCAGGTGCAAATTGGGTCGCATTCTTTTACATATGATTATGTATATGGTAGTTTGGATTCCCCGTCTTCAGCCATCTATGATGATTGCGT TGCTCCTCTGGTTGATGCGTTGTTCCATGGTTACAATGCCACTGTCCTTGCTTACGGCCAGACGGGTTCCGGTAAAACATATACTATGGGTACAAATTAT ACTGGAGAAGGATCTAATGAAGGTGTTATTCCAAAAGTTATGGCTACCATCTTTAGAAGACTTGAGTCGATAAAACAATCGACTGAGTTCTTGATCAGAG TGTCATTCATTGAGATATTCAAAGAAGAGGTGTTCGATTTGCTTGACACGAATACGGTAATATCTAAAGGGGAGGGTGGAAATGCCGGAAAGGCGGTTGT GTCTCCTAGAGTTCCCATTCAAATTAGGGAAACTGTGAATGGAGGCATAACACTTGCCGGTGTGTCCGAAGCAGAAGTTCGTTGTAAAGAAGAAATGGGA GCATACCTCTCCAAAGGTTCATTGGCGCGTGCTACTGCTAGCACTAACATGAATAAGCAATCAAGTCGGTCCCATGCTATATTTACAATTTCCATGGAGC AGAAGAAACTTACTCCTTGTTCAAGTGGAGGAAACAATGAGGATATGTGTGACGACATATTACGAGCAAAACTACACCTTGTAGATCTTGCTGGATCTGA GCGTGCAAAACGAACAGGCGCTGATGGCATGCGTTTCAAAGAAGGCATCCATATCAATAAGGGTTTGTTGGCCCTTGGCAACGTTATCAGTGCATTGGGG GATGAGAAAAAGCGAAAAGATGGTGGTCACGTCCCATACCGTGATAGCAAGTTAACTCGCTTGTTACAGGATTCACTAGGAGGTAACAGCAAGACCGTGA TGATCGCATGTGTAAGCCCTGCTGATACCAACGCGGAGGAGACGCTGAACACATTGAAGTACGCAAATCGTGCTCGAAACATCCAGAACAAAGCTGTTAT CAACCGTGATCCTAATGCCGTTCAACTTCAAAGGATGAGGAGCCAAATTGAACAGTTGCAAGCTGAACTGTGTATTTATCGGGGAGATGCAAATGCACCT TTTGATGAAATTCAGATTCTTAAACATAAGGTATCTTTACTTGAAGCAAGCAATGCTGAATTACAGAAAGAGCTTCAGGAGCGGCAAATGACTTTTGAGC ATTTGAATCAACGCGCTGTTGATGCACAGGTTGAAAAGGACAAATTGATAATGCAGATTGAATTAGTTCGAAATGGTAAATCTTGGGATGAGATTGACGC TGCTTCAGATCAGGATGCTGATTTGGTCAGAAGTTATGTGTCAAAAATTCAAGATTTGGAAGGGGAATTGCTGCGCATCAAAAACTCCAAGCTAAAACAT ACTAGGTTTGTCAATTGTGTGGACTCTAATGATGAGACGTTCCATTCCAGTCCTGGTTTATTTCCTCCAATTGACGGTTTTGCTCCTCCAGATACAAAAT CCTTAGTGATTGCAGATGAGGCTGAAGATGAGGCTGAAGATGAGGAAAAGGAGCTAGAGCACTCATCTATGCAAGAGAAACTTGACAGAGAGTTAAAAGA ATTGGACCGAAGACTTGAACAAAAAGAGGCTGAAATGAAACTTTTTGCAAATGGGGACACTTCCGTTCTTAAACAACACTACGAGAAGAAAGTTCACGAC TTAGAACAAGAAAAGAGAGAATTACAGAAAGAGATTGGTGAACTGAGAAACAATATTTCTAATATCTCGTCTACTTCTGACGACGGTACAAAGAAGTCAA AGGAACAATATCTTCAGAAGTTGACAATCCTTGAGACACAAGTGTCTGAGTTGAAGAAGAAGCAGGACGCCCAAACCCAGTTATTGAGGCAAAAACAAAA GAGTGATGAAGCAGCCAGAAAGCTACAGGAGGAAATTCATCGGATTAAGACTCAAAAGGTTCAACTCCAGCATAAGATCAAACATGAGTCGGAACAATTT AGGTTGTGGAAGGCTTCACGTGAAAAAGAGGTTCTTCAGCTAAAGAAAGAGGGAAGGAAAAATGAATACGAAATGCACAAGTTATTGGCCTTGAATCAGC GCCAGAAAATGGTTCTGCAAAGGAAGACGGAAGAAGCTTCCTTGGCTACCAAAAGACTAAAGGATCTCTTAGAATCCAAAAAGGCTTCTGCACGTGAATT GGATAATGCTGGAAATACCAATGGTGCTGGAATTCAGGCTCTGATGCAGACAGTTGAGCATGAGCTCGAAGTTAGTCTTCGAGTGCATGCAGTGCGTTCT GAGTATGAACGTCAAATGCAAGAGAGAGGTAAAATTGCTCAGGAACTTGCACGTTTGAAGGAAGAAACCGAGATGCTTAAGAAAACTAATTCAAGTGATA CTCCATCAACAATGTCTCCCGGTGCAAGGAATTCGAGAATGTTTGCGCTGGAAAACATGCTGACTACGTCTTCTAACACTCTTGTCTCTATGGCCTCACA ACTCTCTGAGGCAGAAGAGAACGGAAAAGGCTTGAGTGGCAGGGGACGTTGGAATCAAGTGAGATCACTTATTGATGGAAAACACTTGTTAAATTATCTG TTTAATCTGGCTTCTTCATCCAGGTGCATGCTGCGAGACAAAGAAGTTGACTGCAGAGAGAAGGATGGTGAAATAAGAGAGTTGAAAGGAAAGATTGTAA ACCTCAGTGGTTTAATTAGGCATCTGGAGAAACAGAAGGCAGAGCTCAGTCACCAAGTAAAGATACAGAGGTCAGCTTTGAAGATGGAAAATGGAAGCTG TAAATATGAGTTGCGGAAACTGCCACCACGGAGCTCCATCTATTTGATGGAAGATATGGATACATCATTATCAGATCTTTCTGATGATTCGGAGACAAAT GATGATGATGAATGGGTGCGATCAACCAGAAAGAGAAGCAGGAAGATGAACTCAAGAATAGGAGGACGTGACTCAAGATCACCATCAGATTCGTCATCGT CAGGAGATGGAGACGAAGGAGATTCAACAAAAAACGAAGGTGCTGCTGCAGGAGGACAGTGCTGCTCTTGCAGCAAGAAGTCATTTTGCAAAACAACAAA ATGTGAATGCCTAGCAGCTGGTGGAATATGCGGGTCGTCTTGTGGTTGTTCGGTGAATAAGTGCAGTAATAGAGACCCTGCTACTTATGCCATGGTGAAC TTGGATCAATCACAGATTACTGCTGATGAATGCGGTAAGAAAAATAATAATATTGACGAGCTTGCTTCCCATGGCGCCATGCTTCTGGAGAATGCCATGT TCAGCAAGCCTGTTGCTGCTGGGGAGGGAGAGGATGATGCCTCTGAAGCAGCACAAAGGAAGGCATTGTCAGACATAGGCAATACAAAGGCGAAGTCAAA TGCACCGAAGCCAAACCAGAGAAAGAAATGGAGAAAATCGGTAATTCAGCTTGCCCCTGTAGCACCAACGCAACCAGAAACAACAGCAACCAATCATGTT CCACCAGCGACACCTGAGAATGCAGCAGCAGCTCCAAGGATGATGTCTGAGAATGCTGCTAGTAGCAACGGGGTTGGCCTGAAGCTACCAAGGGCCACGA GAGCCCCAGGGTCAAACAAGGGAGTCCTTTTAAGAGAAAGGAATAATGCCACTACTAGTCATCCAGATGAATCTGTTGTGCACAAGGAAGGCGGTGGCAG GGGACGAATCCAGAAGTCAAAAAGAAGTCCTGCCAGGCCGGCGAGAGCTACCGAAGAGAAGGAGAACCACAGCAGGTGA
AA sequence Show only first row Show all	>Lus10000392 pacid=23170849 polypeptide=Lus10000392 locus=Lus10000392.g ID=Lus10000392.BGIv1.0 annot-version=v1.0 MDSNTECVKLAVNIRPLITPELLNGCTDCITLVPGEPQVQIGSHSFTYDYVYGSLDSPSSAIYDDCVAPLVDALFHGYNATVLAYGQTGSGKTYTMGTNY TGEGSNEGVIPKVMATIFRRLESIKQSTEFLIRVSFIEIFKEEVFDLLDTNTVISKGEGGNAGKAVVSPRVPIQIRETVNGGITLAGVSEAEVRCKEEMG AYLSKGSLARATASTNMNKQSSRSHAIFTISMEQKKLTPCSSGGNNEDMCDDILRAKLHLVDLAGSERAKRTGADGMRFKEGIHINKGLLALGNVISALG DEKKRKDGGHVPYRDSKLTRLLQDSLGGNSKTVMIACVSPADTNAEETLNTLKYANRARNIQNKAVINRDPNAVQLQRMRSQIEQLQAELCIYRGDANAP FDEIQILKHKVSLLEASNAELQKELQERQMTFEHLNQRAVDAQVEKDKLIMQIELVRNGKSWDEIDAASDQDADLVRSYVSKIQDLEGELLRIKNSKLKH TRFVNCVDSNDETFHSSPGLFPPIDGFAPPDTKSLVIADEAEDEAEDEEKELEHSSMQEKLDRELKELDRRLEQKEAEMKLFANGDTSVLKQHYEKKVHD LEQEKRELQKEIGELRNNISNISSTSDDGTKKSKEQYLQKLTILETQVSELKKKQDAQTQLLRQKQKSDEAARKLQEEIHRIKTQKVQLQHKIKHESEQF RLWKASREKEVLQLKKEGRKNEYEMHKLLALNQRQKMVLQRKTEEASLATKRLKDLLESKKASARELDNAGNTNGAGIQALMQTVEHELEVSLRVHAVRS EYERQMQERGKIAQELARLKEETEMLKKTNSSDTPSTMSPGARNSRMFALENMLTTSSNTLVSMASQLSEAEENGKGLSGRGRWNQVRSLIDGKHLLNYL FNLASSSRCMLRDKEVDCREKDGEIRELKGKIVNLSGLIRHLEKQKAELSHQVKIQRSALKMENGSCKYELRKLPPRSSIYLMEDMDTSLSDLSDDSETN DDDEWVRSTRKRSRKMNSRIGGRDSRSPSDSSSSGDGDEGDSTKNEGAAAGGQCCSCSKKSFCKTTKCECLAAGGICGSSCGCSVNKCSNRDPATYAMVN LDQSQITADECGKKNNNIDELASHGAMLLENAMFSKPVAAGEGEDDASEAAQRKALSDIGNTKAKSNAPKPNQRKKWRKSVIQLAPVAPTQPETTATNHV PPATPENAAAAPRMMSENAASSNGVGLKLPRATRAPGSNKGVLLRERNNATTSHPDESVVHKEGGGRGRIQKSKRSPARPARATEEKENHSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60930			P-loop containing nucleoside t...		Lus10000392 [exp]	0	1
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10012261 [exp]	1.0	0.9756
AT5G17160			unknown protein		Lus10038036 [exp]	4.5	0.9602
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10007629 [exp]	4.9	0.9477
AT3G20150			Kinesin motor family protein (...		Lus10016589 [exp]	6.7	0.9597
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	8.9	0.9491
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10034060 [exp]	12.4	0.9474
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10012799 [exp]	13.2	0.9479
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Lus10037018 [exp]	13.3	0.9076
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	16.4	0.9401
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10010519 [exp]	17.0	0.9432

Compare expression of checked genes

Lus10000392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.