Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03620 333 / 1e-107 Subtilisin-like serine endopeptidase family protein (.1) AT5G59190 327 / 3e-106 subtilase family protein (.1) AT5G59090 318 / 2e-102 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59120 309 / 7e-99 ATSBT4.13 subtilase 4.13 (.1) AT5G59100 307 / 5e-98 Subtilisin-like serine endopeptidase family protein (.1) AT5G58820 303 / 7e-97 Subtilisin-like serine endopeptidase family protein (.1) AT4G15040 296 / 4e-94 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 297 / 6e-94 XSP1 xylem serine peptidase 1 (.1) AT3G46840 295 / 2e-93 Subtilase family protein (.1) AT5G58840 293 / 6e-93 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009867 [exp] 640 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004685 [exp] 485 / 8e-167 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10040253 [exp] 483 / 8e-167 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10009868 [exp] 462 / 7e-159 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 424 / 9e-144 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10000396 [exp] 342 / 4e-112 AT5G59190 477 / 4e-160 subtilase family protein (.1) Lus10009313 [exp] 335 / 2e-108 AT4G00230 924 / 0.0 xylem serine peptidase 1 (.1) Lus10004686 [exp] 327 / 3e-105 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10016482 [exp] 313 / 2e-100 AT3G46850 709 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196800 [exp] 466 / 8e-160 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 426 / 2e-145 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 402 / 1e-134 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 350 / 1e-113 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.002G151900 [exp] 339 / 2e-110 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 333 / 4e-108 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G037900 [exp] 327 / 1e-105 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G038001 [exp] 324 / 2e-104 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.003G120101 [exp] 285 / 2e-90 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.005G067200 [exp] 277 / 2e-86 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10000394 pacid=23147824 polypeptide=Lus10000394 locus=Lus10000394.g ID=Lus10000394.BGIv1.0 annot-version=v1.0 ATGTGTACATGGAAGAGCGCCCAAAGGCCGGCGGAACGCCTCCCTCCGCATTTCACCGGAGCTAGCTCCGACAAGTTACCGGCAGCAGATTCCTTAGTGT ACAGCTACCACAGGAGCTTCAATGCCTTCGCTGCCAAACTTACTGAGGCCGAGAAAGACAAACTATCCGGCTATAAAGACGTAGTCTCTGTGTTCCCCAG TCTGAAGAGACAACTCCACACCACAAGGTCATGGGACTTCCTGGGTTTCCCCCAGAATGTGACAAGAACAATAGGAGAGAGCGACATTATCATTGGAATG CTAGACACTGGGGTTTGGCCGGAATCTCAAAGCTTCAATGATTCAGGTTATGGTCCTCCTCCCAAGAAATGGAAGGGTACTTGTCAATCCTCTTCCAACT TCACCTGCAACAAATATTATCATATTCAAAGTGAAATTAGCACAAAAGATGCTGATTCACCAAGGGACACAGAAGGTCACGGGACACACACTGCATCAAC AGCAGCAGGGAGCTTTGTTAATCCAGCTAGTCTCCTTGGCATTCCCTCTGGGACGGCTCGTGGATGTGTTCCCTCAGCTCGAATCGCGGTCTACAAAATC TGCTGGTCTGATGGCTGCTCTGACGCTGACATTCTAGCAGCATTTGATGATGCCATTGCTGACGGAGTTGACATTATCTCCCTCTCAGTTGGTAGTTCCC CACAGGACTATTTTGAAGATACCATTGCTATTGGTGCTTTCCATTCTACAAAGAATGGGATTCTAACTTCCAACTCAGCTGGTAACAGTGGCCCTGCCCC TAGCAAAATCTCCAATTGCTACCCTTGGTCTCTTTCTGTTGCTGCTAGCACCACTGATAGAAAGTTCATCACCAATGTCAAGTTGGGTAATGGCAAGGTT CTTGGGGGAAGTTCTCTAAATACTTTTACGCCTGGTCAGAAGATGTATCCGATAATCTATGGACGTGATGCACCAAATAGGACAACGGGAAGTGCTGGAT CGATGTCCAGGTACTGCTATGACGGATCATTGGACAAGGATCTTGTGAAAGGGAAGATCGTATACTGCGATGAAGCCACTATCGAGACGGGACCATTAGA AGATGGTGCTATTCTCCATAATGCCATATTCTTCACCAACAGAGAATGA
AA sequence Show only first row Show all	>Lus10000394 pacid=23147824 polypeptide=Lus10000394 locus=Lus10000394.g ID=Lus10000394.BGIv1.0 annot-version=v1.0 MCTWKSAQRPAERLPPHFTGASSDKLPAADSLVYSYHRSFNAFAAKLTEAEKDKLSGYKDVVSVFPSLKRQLHTTRSWDFLGFPQNVTRTIGESDIIIGM LDTGVWPESQSFNDSGYGPPPKKWKGTCQSSSNFTCNKYYHIQSEISTKDADSPRDTEGHGTHTASTAAGSFVNPASLLGIPSGTARGCVPSARIAVYKI CWSDGCSDADILAAFDDAIADGVDIISLSVGSSPQDYFEDTIAIGAFHSTKNGILTSNSAGNSGPAPSKISNCYPWSLSVAASTTDRKFITNVKLGNGKV LGGSSLNTFTPGQKMYPIIYGRDAPNRTTGSAGSMSRYCYDGSLDKDLVKGKIVYCDEATIETGPLEDGAILHNAIFFTNRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59190			subtilase family protein (.1)		Lus10000394 [exp]	0	1
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	13.9	0.8814
AT1G49870			unknown protein		Lus10002116 [exp]	19.2	0.8704
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	21.5	0.8681
AT5G44040			unknown protein		Lus10032776 [exp]	27.9	0.8617
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	32.6	0.8628
AT5G56120			unknown protein		Lus10027112 [exp]	51.6	0.8384
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Lus10022440 [exp]	55.5	0.8495
AT1G67820			Protein phosphatase 2C family ...		Lus10006222 [exp]	57.2	0.8478
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10039907 [exp]	61.2	0.8390
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	64.1	0.8425

Compare expression of checked genes

Lus10000394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.