Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00230 265 / 4e-83 XSP1 xylem serine peptidase 1 (.1) AT5G59100 262 / 6e-82 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 260 / 3e-81 Subtilase family protein (.1) AT5G03620 260 / 6e-81 Subtilisin-like serine endopeptidase family protein (.1) AT5G58830 258 / 6e-81 Subtilisin-like serine endopeptidase family protein (.1) AT5G58840 256 / 6e-80 Subtilase family protein (.1) AT5G59120 256 / 6e-80 ATSBT4.13 subtilase 4.13 (.1) AT5G59090 252 / 3e-78 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G58820 248 / 6e-77 Subtilisin-like serine endopeptidase family protein (.1) AT3G46840 248 / 1e-76 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009867 [exp] 566 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10040253 [exp] 451 / 3e-155 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004685 [exp] 447 / 2e-153 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10004683 [exp] 416 / 7e-142 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 408 / 3e-139 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10000396 [exp] 348 / 2e-115 AT5G59190 477 / 4e-160 subtilase family protein (.1) Lus10004682 [exp] 343 / 1e-114 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10004681 [exp] 305 / 8e-103 AT5G59100 257 / 2e-79 Subtilisin-like serine endopeptidase family protein (.1) Lus10004686 [exp] 302 / 5e-97 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196700 [exp] 404 / 6e-138 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 399 / 9e-135 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 328 / 2e-107 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 314 / 3e-101 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.003G120101 [exp] 303 / 3e-98 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.009G038001 [exp] 298 / 1e-95 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.014G074500 [exp] 272 / 2e-87 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1) Potri.009G037900 [exp] 274 / 1e-86 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 265 / 7e-83 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.005G067200 [exp] 246 / 8e-76 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10000395 pacid=23147825 polypeptide=Lus10000395 locus=Lus10000395.g ID=Lus10000395.BGIv1.0 annot-version=v1.0 ATGGCTGCCACTGATGGCGGTAAAGTTCTGGATTACATAAACTCAACTAGAGATCCAACTGCAGTTATTTTGAGAACAACTGATTATACAGATTCTTCAT CCCCTCATGTGGTGTATTTTTCATCAAGGAGACCTAATCCCATAACCAGTGACATTCTCAAGCCGGACTTGACAGCACCTGGAGTTAACATCCTAGCAGC TTGGACTGAAGCAACCAGCTTATCAGGTGAAAGTGGAGACACTAGAATCGTCCCTTATAACATCATCTCTGGGACATCCATGTCTTGCCCCCATGTGTCT GGAGCAGCTGCTTATGTTAAATCATTTCACCCCACTTGGTCTCCAGCCGCCATCAAGTCTGCTCTGATGACAACAGCACTTTCAATGAGTGTCAAAGAAA ATTCCGGTGCTGAGTTTGCATACGGATCAGGGCAGATAAATCCTGCAATGGCTGCAGATCCCGGGCTAGTTTATGATTGCGGAGAGAGTGATTATGTTAA ATTGCTTTGCGGCCAAGGATATAGCACGAAACAACTCCGCCTTGTCACAGGAGATCAAAGTGTTTGTTCAACATCAACAAATGGCACAGTATGGGATCTC AACTACCCTTCTTTTGCTCTTTCACCATCATCATCATCATCATCATCCATGAAGACTGTGACCCAAGTGTTCCATAGAACTGTGACAAATGTCGGGCAAG CAGTATCCAGCTACTTGGCATTGGTGCATGCTCCATCTGGGCTTAAGGTCCAAGTTGAACCAAATGTGCTTGATTTCAAAGGTGTTGGAGAGAAACAACA GTTTGTTGTGACAGTCACGGCTCTATTGGGAAACTCAACAATCTCTGGTTCTCTGCTTTGGACTGATGGCAACCACACTGTTAGAAGCCCTATTGTGGCC TTTCTCAAGGACTAA
AA sequence Show only first row Show all	>Lus10000395 pacid=23147825 polypeptide=Lus10000395 locus=Lus10000395.g ID=Lus10000395.BGIv1.0 annot-version=v1.0 MAATDGGKVLDYINSTRDPTAVILRTTDYTDSSSPHVVYFSSRRPNPITSDILKPDLTAPGVNILAAWTEATSLSGESGDTRIVPYNIISGTSMSCPHVS GAAAYVKSFHPTWSPAAIKSALMTTALSMSVKENSGAEFAYGSGQINPAMAADPGLVYDCGESDYVKLLCGQGYSTKQLRLVTGDQSVCSTSTNGTVWDL NYPSFALSPSSSSSSSMKTVTQVFHRTVTNVGQAVSSYLALVHAPSGLKVQVEPNVLDFKGVGEKQQFVVTVTALLGNSTISGSLLWTDGNHTVRSPIVA FLKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10000395 [exp]	0	1
AT5G03670			unknown protein		Lus10035565 [exp]	5.4	0.8838
AT4G23800		3xHMG-box2, AT4...	3xHigh Mobility Group-box2, HM...		Lus10023090 [exp]	8.7	0.8748
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Lus10031812 [exp]	10.8	0.8634
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	11.7	0.8418
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	21.7	0.8625
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	23.8	0.8701
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10007929 [exp]	24.3	0.8407
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	25.0	0.8578
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10006818 [exp]	25.7	0.7631
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	27.1	0.8213

Compare expression of checked genes

Lus10000395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.