Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59100 422 / 5e-138 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 421 / 6e-138 Subtilase family protein (.1) AT5G58830 419 / 2e-137 Subtilisin-like serine endopeptidase family protein (.1) AT5G59190 418 / 5e-137 subtilase family protein (.1) AT5G59120 415 / 2e-135 ATSBT4.13 subtilase 4.13 (.1) AT3G46840 414 / 3e-135 Subtilase family protein (.1) AT4G00230 414 / 6e-135 XSP1 xylem serine peptidase 1 (.1) AT5G59090 412 / 2e-134 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G58840 407 / 8e-133 Subtilase family protein (.1) AT5G03620 405 / 4e-131 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009868 [exp] 923 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 696 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10040253 [exp] 694 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004685 [exp] 691 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10009867 [exp] 669 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004682 [exp] 555 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10004686 [exp] 474 / 5e-158 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002964 [exp] 457 / 2e-151 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042555 [exp] 452 / 1e-149 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196700 [exp] 669 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 665 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 587 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 510 / 1e-173 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.012G133200 [exp] 472 / 1e-156 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.009G038001 [exp] 464 / 3e-154 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.014G074500 [exp] 449 / 2e-150 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 452 / 9e-150 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 438 / 2e-144 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.009G145600 [exp] 432 / 1e-142 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10000396 pacid=23147823 polypeptide=Lus10000396 locus=Lus10000396.g ID=Lus10000396.BGIv1.0 annot-version=v1.0 ATGGGCCACCGTCCCAATACTGACACTCCTGCTTCAGCCATTCATATCACCATCCTTCATCAGCTTACCGGCAGAGTCCTTGGTACACAGCTACACCAAG AGCTTCAATGGGTGTACCGCCTGGCTCACTCCCACCCAGCAAGCCAAACTATCAGATTTCCCGTTCAATTACAGGCTATGAAGGTGTGGTTTCTGTTTTC CCTAGCCAGCGGAGGCAACTCCACACCACCAGATCATGGGACTTCCTCGGCTTCCCCCAGAATGTCTCAAGAACCACCATACACTGGAATTTGGCCTGAG TCCCAAAGCTTTAACGATTCTGGGTATGGCCTCCCCCCAAAGAAATGGAAGGGTACCTGCCAATCCTTTTCCAATTTCACTTGTAACAACAAGATAATTG GAGCTAGACTTTACCACGCTGCCCGAAACTTTAGTGAGGAGGAATTTCCCTCACCTAGGGATTCTGAAGGTCATGGGTCTCACACTGCATCCACAGCAGC TGGAAACTTGGTCACTTCTGCTAGTCTTCTTGCCCTTTCATCTGGAACGGCTCGTGGCGGGGTCCCTTCTGTCCGAATTGCTGTCTACAAGATTTGTTGG TCTGATGGCTGTTTCGATGCTGATATTCTAGCTGCTTTTGATGATGCTATTGCTGATGGAGTTGATATTATCTCCTTGTCCGTTGGAGGATCCCCAACTG AATATTTCAAAGACGCTATAGCTATTGGGGCGTTCCATTCCATGAAGAAGGGAATTCTTACATCCAATTCTGCTGGTAATTCAGGTCCTGAACCTGGTTC TATCTCCAATTGCTCTCCTTGGTCACTCTCTGTAGCGGCTAGCACCATCGATCGCCAGTTCTTAACTACTGTCCAGTTGGGTAATGGACAGAATTATAAG GGTCTCTCCATAAATACTTTTCAACCAAATAGTTCGTATCCTCTTATCTATGCCGGAGATGCACCTAATAGAACCTCAGGGCACAATTTATCCAACTCAA GGTTCTGCGATCCTGGCAGCTTGGACAAGAATTTGGTGCAAGGCAAAATTGTGCATTGTGATGACGGGAGCAGTTTGAGCAACTTACAAACTGGGACTAA TATGGTTGTATTCTACTATTCTTATGTGGTCTATGCTAGTAACCCAACTGCTGTAATATTCAAGACCGATGCAGTCCCCGATAACTCATCCCCTTACGTT GCCGTCTTCTCTTCAAGGGGACCTAACCCTATAACCAGAGACATTCTTAAGCCTGACCTTACAGCACCTGGAGTTGATATCCTAGTAGCATGGTCTGAAG CTACAACGGTATCAGGCGATGAAGGAGATACAAGAGTTGTCCCATTCAACATTATCTCTGGTACTTCCATGTCTTGTCCTCATGCTACTGCAGCAGCAGC TTATATTAAATCATTCCACCCTAATTGGTCACCAGCTGCTATCAAGTCCGCTCTCATGACTACAGCTCATTCGGTAAATGTGAAGGACATTAATTTCGAG TCCGAGTTTGGATACGGATCAGGCCAAATCAACCCCATCACGGCTGCAGATCCTGGGCTAGTATACGATGCTGGGGAGATTGATTATGTTAAAATGCTAT GTGGGCAAGGATACAACGCTACACAACTTCGTCTGGTTACAGGAGATCCAAGTGCTTGTTCTGTATCCAGAAATGGAACAGTTTGGGACCTAAACTACCC GTCGTTCGCTCTATCATCAGAGAAGCCCAAGAAATCCATTACTCGTGTGTTTCACAGGACAGTTACGAACGTTGGATCAGCAGTGTCAACATACAAAGCT TTTCTGGGAGGCAACATGTTAGCTGGCTCTTTGGTTTGGAAAGATGGGATTCATTCCGTGAGGAGTCCTATTGTCGCTTTTGTGGCTCCTCAAGAAGATA GCTGCGGAGAGGTGTGTTCATCAGATTCGGACAAGTCTGAACCAAGTCTTTTGGGTTCGTTAGCAAAGGAAGCAGCTTCAAGGGGACACGGAACCAAACT TGAGAGCGACGTCGTATTGAGACAAAAATATCCCTGA
AA sequence Show only first row Show all	>Lus10000396 pacid=23147823 polypeptide=Lus10000396 locus=Lus10000396.g ID=Lus10000396.BGIv1.0 annot-version=v1.0 MGHRPNTDTPASAIHITILHQLTGRVLGTQLHQELQWVYRLAHSHPASQTIRFPVQLQAMKVWFLFSLASGGNSTPPDHGTSSASPRMSQEPPYTGIWPE SQSFNDSGYGLPPKKWKGTCQSFSNFTCNNKIIGARLYHAARNFSEEEFPSPRDSEGHGSHTASTAAGNLVTSASLLALSSGTARGGVPSVRIAVYKICW SDGCFDADILAAFDDAIADGVDIISLSVGGSPTEYFKDAIAIGAFHSMKKGILTSNSAGNSGPEPGSISNCSPWSLSVAASTIDRQFLTTVQLGNGQNYK GLSINTFQPNSSYPLIYAGDAPNRTSGHNLSNSRFCDPGSLDKNLVQGKIVHCDDGSSLSNLQTGTNMVVFYYSYVVYASNPTAVIFKTDAVPDNSSPYV AVFSSRGPNPITRDILKPDLTAPGVDILVAWSEATTVSGDEGDTRVVPFNIISGTSMSCPHATAAAAYIKSFHPNWSPAAIKSALMTTAHSVNVKDINFE SEFGYGSGQINPITAADPGLVYDAGEIDYVKMLCGQGYNATQLRLVTGDPSACSVSRNGTVWDLNYPSFALSSEKPKKSITRVFHRTVTNVGSAVSTYKA FLGGNMLAGSLVWKDGIHSVRSPIVAFVAPQEDSCGEVCSSDSDKSEPSLLGSLAKEAASRGHGTKLESDVVLRQKYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59190			subtilase family protein (.1)		Lus10000396 [exp]	0	1
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	8.6	0.8542
AT2G48020			Major facilitator superfamily ...		Lus10027973 [exp]	11.2	0.8280
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	12.4	0.8520
AT1G07270			Cell division control, Cdc6 (....		Lus10000427 [exp]	13.7	0.8340
AT2G20410			RNA-binding ASCH domain protei...		Lus10014656 [exp]	18.4	0.8336
					Lus10014678 [exp]	24.2	0.8473
AT5G19670			Exostosin family protein (.1)		Lus10043239 [exp]	29.0	0.8319
AT5G06830			unknown protein		Lus10016277 [exp]	30.4	0.8427
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Lus10015616 [exp]	32.9	0.7596
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	33.0	0.8448

Compare expression of checked genes

Lus10000396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.