Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05960 139 / 1e-43 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G53980 135 / 3e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT2G37870 82 / 4e-21 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT5G48485 41 / 2e-05 DIR1 DEFECTIVE IN INDUCED RESISTANCE 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009872 [exp] 226 / 6e-78 AT5G05960 148 / 2e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10004677 [exp] 163 / 6e-53 AT5G05960 142 / 8e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10031925 [exp] 74 / 4e-17 AT2G37870 133 / 1e-40 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10040249 [exp] 65 / 6e-15 AT3G53980 42 / 2e-06 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10011358 [exp] 43 / 8e-06 AT1G27950 103 / 5e-28 glycosylphosphatidylinositol-anchored lipid protein transfer 1 (.1) Lus10006413 [exp] 40 / 0.0002 AT1G27950 137 / 5e-41 glycosylphosphatidylinositol-anchored lipid protein transfer 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G061800 [exp] 177 / 7e-59 AT5G05960 155 / 3e-50 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.010G196300 [exp] 172 / 7e-57 AT5G05960 150 / 2e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.016G104300 [exp] 138 / 3e-43 AT3G53980 143 / 2e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.008G141000 [exp] 88 / 4e-23 AT2G37870 121 / 2e-36 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.010G100600 [exp] 80 / 4e-20 AT2G37870 122 / 3e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10000397 pacid=23147827 polypeptide=Lus10000397 locus=Lus10000397.g ID=Lus10000397.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCGATGAAGTTGTGCATTTGTCTTGTGGGGTTGGCTGTGGTATTTGGGATGTCTGGGTTTGCTGTGGATGGAGCTGGTGAGTGTGGGAAAT CCACCAACCCAGACAGGGAAGCATTCAAGCTAGCTCCCTGCGCATCAGCAGCACAGGATGAGAATTCTGCGGTTTCAAGCCAGTGCTGTGCTGCGGTGAA GAAGCTTGGGCAGAACCCAGCTTGCCTCTGTGCTGTGATGCTTTCCAATACTGCTAAGAGCTCTGGGGTTAAGCCAGAAGTGGCCATGGCCATCCCCAAA CGCTGCAACATTGCTGACCGTCCCGTTGGTTATAAGTGTGGAGGCATGCCACTGACATATATAATTGACTCAAATTCTTTCCATGTGTTTCTGTAG
AA sequence Show only first row Show all	>Lus10000397 pacid=23147827 polypeptide=Lus10000397 locus=Lus10000397.g ID=Lus10000397.BGIv1.0 annot-version=v1.0 MAASMKLCICLVGLAVVFGMSGFAVDGAGECGKSTNPDREAFKLAPCASAAQDENSAVSSQCCAAVKKLGQNPACLCAVMLSNTAKSSGVKPEVAMAIPK RCNIADRPVGYKCGGMPLTYIIDSNSFHVFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	0	1
					Lus10038207 [exp]	1.4	0.8698
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10028797 [exp]	5.0	0.8793
AT5G02090			unknown protein		Lus10024357 [exp]	6.0	0.8595
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10009086 [exp]	7.4	0.8408
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	10.0	0.8556
AT3G47160			RING/U-box superfamily protein...		Lus10011390 [exp]	12.0	0.8319
AT3G52360			unknown protein		Lus10016198 [exp]	12.6	0.7905
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	12.6	0.8339
AT1G22170			Phosphoglycerate mutase family...		Lus10033465 [exp]	13.9	0.8173
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034542 [exp]	14.6	0.6878

Compare expression of checked genes

Lus10000397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.