Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05940 606 / 0 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT5G02010 564 / 0 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT3G55660 496 / 9e-171 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G38430 445 / 4e-151 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT4G00460 417 / 3e-141 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 406 / 1e-136 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT2G45890 381 / 3e-127 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT3G24620 362 / 5e-119 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G13240 356 / 7e-117 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT1G52240 346 / 1e-111 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009874 [exp] 961 / 0 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10040248 [exp] 703 / 0 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 690 / 0 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 563 / 0 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 562 / 0 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10023983 [exp] 428 / 8e-144 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 425 / 2e-142 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 410 / 2e-137 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 404 / 2e-135 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G062000 [exp] 736 / 0 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.010G196000 [exp] 733 / 0 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.016G104400 [exp] 607 / 0 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.006G092600 [exp] 605 / 0 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.009G140100 [exp] 459 / 3e-156 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 449 / 4e-152 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.014G084200 [exp] 429 / 7e-146 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G159700 [exp] 426 / 1e-144 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.005G247100 [exp] 429 / 2e-144 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 415 / 4e-139 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10000399 pacid=23147828 polypeptide=Lus10000399 locus=Lus10000399.g ID=Lus10000399.BGIv1.0 annot-version=v1.0 ATGAATACTGTGGAGAAGAAGGGTAGTGGAGGAATTGAGAAAACGAGAAATGGATGGGAGTCACCGATGAGCAGTAGCAGCGGTGGGGAAATGAGCTCCA AGACTGAGAGGAGGAGAAGCAGTGTTGGGTGTGATTCTCATTCGTCTCATTCTAGGTCTCCTCTGGGTTGGCCGATAAAGAAAGCTGGAGAGAGGAAGAG TTTGTTGTCATCTGTTTGTGGTGGGTATGGTTATGGAGGAGGAGATGAAGAGAATGGTAGCCTGTTGAAGGATTCCAAGTTATTCATGCTCAACCCCCGC AATTCTGAGACGGATTTGATGAAAGAGAGGTTTGCAAAATTGTTGCTTGGAGAAGACATGTCAGGTTCTGGAAAAGGGGTTTGTACAGCCCTCGCTATCT CCAATGCCATCACCAATCTCTGTGCTACTGTGTTTGGTCAACTATGGAGGCTTGAACCACTACCTCCACAGACGAAATCACTGTGGAGAAGAGAGATCGA ATGTCTACTTTCTGTCGGCGATCACATAGTAGAGCTAATTCCCTCATGGCAAACGTACGCTGACGGAAGTAAGCATGAGGTCATGACTTGCAGGGCTAGA TCGGACCTTTTTATCAATCTCCCAGCTCTGCGGAAGCTTGATAACATGCTTCTTGAAGTATTGGATAGTTTTGTGGATACGGAGTTCTGGTATGTTGATC AAGGGATTGTAGCTTCAGATGCAGCGGATGGCTCAGCTTCCTTCCGAAGAACCATTCAGCGGGAAGAGGACAAGTGGTGGCTACCAGTACCCCGTGTCCC CGCTGGTGGTCTTAGTGACGATTCAAGAAAACAGTTGAACCACACTCGTGAAAGCACCAGCCAGATACTCAAAGCTGCTATGGCAATCAACAGCGTTGTT TTAGCTGACATGGATGTTCCTGACTCCTACTTAGACACTCTTCCCAAGAATGGGAGAGCTTGTCTGGGAGACTTGCTATATCGGTATATTACTTCAGATC AGTTCTCAGCAGACTGCCTGCTCGATTACCTTCACATTTCTTCAGAACATGTTGCTTTTGACATTGCAAATCGTATCGAGTCTGCAATCTATGTTTGCCA GCGGAGGGCTCATCCGAAACCGAAAACAACCCAAAACCGGACCAGTACAAAGTCATCATGGGAGATGGTGAAGGAGTTGATGATGGATGGAGACAATATA GAAATGCTTGCGGAAAGAGCGGAAAGCCTCTTGCTTTCCTTGAAGCAACGGTTTCCCAATCTAACCCAGACTACATTAGACACCAGCAAAATCCAGTTCA ACAAGGATGTGGGGAAGTCCATCCTTGAGAGCTATGCAAGAGTTCTGGAGAGCTTGGCATTCAACATCGTTGCACGCATCGATGATCTGCTGTATGTTGA TGATCTGACAAAATGTTCAGACAAACTATCTGTGACTGGACACAAGAAGGTCTCATACCCAGGCACTCCCTATAGAACAACATTCAGCACACCAAGCCGT TCACCTCTTCCTCTTGTTAGTCCTGCAAGAGGTGAGAGAACTCCATTTGTCAATACCACCAACACCATTGTCGTCACTGCCGCCAACAGGCGAAATAATC ATCATCATCGTCGTGGGTTCGGAGTGAAGAAGGCGTTAACAAATTATCTCGGTGCTGACGTAAAATCAAAAGTCTGTGGCAACCCAACTGATGATGCAAA CCAGAATGAGAACAAGTCACGGTAG
AA sequence Show only first row Show all	>Lus10000399 pacid=23147828 polypeptide=Lus10000399 locus=Lus10000399.g ID=Lus10000399.BGIv1.0 annot-version=v1.0 MNTVEKKGSGGIEKTRNGWESPMSSSSGGEMSSKTERRRSSVGCDSHSSHSRSPLGWPIKKAGERKSLLSSVCGGYGYGGGDEENGSLLKDSKLFMLNPR NSETDLMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATVFGQLWRLEPLPPQTKSLWRREIECLLSVGDHIVELIPSWQTYADGSKHEVMTCRAR SDLFINLPALRKLDNMLLEVLDSFVDTEFWYVDQGIVASDAADGSASFRRTIQREEDKWWLPVPRVPAGGLSDDSRKQLNHTRESTSQILKAAMAINSVV LADMDVPDSYLDTLPKNGRACLGDLLYRYITSDQFSADCLLDYLHISSEHVAFDIANRIESAIYVCQRRAHPKPKTTQNRTSTKSSWEMVKELMMDGDNI EMLAERAESLLLSLKQRFPNLTQTTLDTSKIQFNKDVGKSILESYARVLESLAFNIVARIDDLLYVDDLTKCSDKLSVTGHKKVSYPGTPYRTTFSTPSR SPLPLVSPARGERTPFVNTTNTIVVTAANRRNNHHHRRGFGVKKALTNYLGADVKSKVCGNPTDDANQNENKSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10000399 [exp]	0	1
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	4.0	0.8135
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	4.0	0.8272
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10024022 [exp]	6.2	0.7977
AT1G21320			nucleotide binding;nucleic aci...		Lus10018903 [exp]	8.1	0.7774
AT1G55040			zinc finger (Ran-binding) fami...		Lus10031502 [exp]	9.8	0.7347
AT2G16676			unknown protein		Lus10035139 [exp]	13.0	0.7679
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10028352 [exp]	16.5	0.7390
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	16.6	0.7934
AT5G65530			Protein kinase superfamily pro...		Lus10035949 [exp]	17.9	0.7633
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015201 [exp]	19.8	0.7457

Compare expression of checked genes

Lus10000399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.