Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16220 531 / 0 Protein phosphatase 2C family protein (.1) AT1G79630 523 / 0 Protein phosphatase 2C family protein (.1.2.3) AT3G02750 461 / 7e-159 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 400 / 9e-136 Protein phosphatase 2C family protein (.1) AT5G36250 400 / 1e-135 Protein phosphatase 2C family protein (.1) AT4G03415 392 / 3e-132 Protein phosphatase 2C family protein (.1.2) AT5G01700 313 / 1e-102 Protein phosphatase 2C family protein (.1.2) AT3G05640 302 / 1e-98 Protein phosphatase 2C family protein (.1.2) AT5G27930 301 / 2e-98 Protein phosphatase 2C family protein (.1.2) AT3G16800 273 / 9e-88 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027122 [exp] 927 / 0 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10022588 [exp] 401 / 7e-137 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10018570 [exp] 397 / 5e-134 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10031631 [exp] 395 / 7e-134 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1) Lus10033708 [exp] 395 / 1e-133 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 394 / 6e-133 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10021486 [exp] 389 / 7e-132 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10041277 [exp] 411 / 1e-131 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 406 / 7e-129 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G473300 [exp] 592 / 0 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.004G066200 [exp] 585 / 0 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G054200 [exp] 518 / 0 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 494 / 2e-172 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G103100 [exp] 403 / 1e-136 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 402 / 5e-136 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 340 / 6e-112 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 332 / 1e-108 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 309 / 2e-101 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G006200 [exp] 309 / 3e-101 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10000402 pacid=23146193 polypeptide=Lus10000402 locus=Lus10000402.g ID=Lus10000402.BGIv1.0 annot-version=v1.0 ATGGGAACTTGTTATTCATCCATGGGGAAGGAGGGGAAAGAAAATGGAGAAGGGATAGAAACGCCGACAAATGGTTCCCCAAGGAAGAACAAGTGGAGAA AGAAGAGCAGAGATAGGAAATCAGGCGGCGGCGATCAGGAGAATAGTTCACTGCATCGGATTCAAGGGAGAATGGTGATGAGTGGTTGCAGTAAAATCGC TTGCTTGCATACACAGCAGGGAAAGAAAGGGACAAATCAGGACGCCATGATTGTCTGGGAGAATTTTGGGTCCAGAAACAATGCAGTATTCTGCGGAGTA TTTGATGGCCATGGCCCTTCCGGTCATATGGTTGCCAGAAGAGTTCGGGATTCACTTCCTATATTGTTGAATAAGCAGTGGCAAGTTGGTGCCAATGGGG AACATAGCAGCCTGGAAAAGACTGGAAACTCTCTTGGGAGTATGGATTCTGAGGAAAATTCTTCAGTATGTGGTGATGATGAATCATATGACTCAATGGA GGTTGAGGAAAGTGACAAGGTGCCGGAGATGTATGTACCACTGAAAAGGTCTATGTTAAAAGCATTCAAGTTGATGGATAAGGAGCTGAAGCTACATCCT ACAATTGATTGCTTTTGCAGTGGAACAACTGCTGTGACTTTGATAAAGCTGGATGAGGATCTCATTCTCGGAAACGTTGGTGATTCTAGAGCGGTGCTGG CAACAAGAGCTGATGACAATTCTTTGCTTGCTGTTCAATTGACTGTTGACTTGAAGCCTGATCTTCCAAGAGAAGCTGCCAGGATCCAGCAATGTAAAGG AAGGGTCTTTGCGTTGCAGGATGAGCCAGAAGTTGCACGTGTGTGGTTGCCTAATAGCGATTCACCTGGTCTAGCAATGGCTAGAGCTTTCGGTGACTTC TGCCTCAAGGATTTTGGTTTAATTTCCGTACCAGACCTTTTCTACCGTCGCCTCACATTGAAAGATGAATTCATCATTCTTGCCTCTGACGGGGTATGGG ATGTTCTTTCAAACAAGGAAGCTGTGGATATTGTGGCTTCAGCCCCTGGCCGAGCAACTGCTGCTAGGGCGTTGATCGATTGCGCTGTTCGTGCTTGGAA ATTAAAATACCCCACTTCGAAAAACGATGATTGTGCTGTTGTGTGCCTCTTTCTGGATCATTCACTTGCAGAAAATGGTACAGAGGAAGGGCTGGGGACG AAAGAGGAACCGGCGGCTGCTCAAGCCAGCACGGTGTCTGGGGATACAGAAATGCACGAGAACTCTCACGATCACGTTCTGACCCATTCGGGAACTACAA GATGCTCTGACGAGATTGTGCCAGTGTCTGAATCTACAGAGGTGAAAATAAATGCAACGAGCCAGACCCGGAGTCAGTCCAAGAGGAGCCTTGCTGAGTG CATTTCGAGTAGGGAGGAAGATGAGTGGTCAGCATTAGAAGGTATTACTAGGGTTAATAGTCTTCTGAGCATTCCCAGGTTTTTATCAGGAGATAGAAGA TCATCAGGAAGCAGAAGAAAATGGTTATAA
AA sequence Show only first row Show all	>Lus10000402 pacid=23146193 polypeptide=Lus10000402 locus=Lus10000402.g ID=Lus10000402.BGIv1.0 annot-version=v1.0 MGTCYSSMGKEGKENGEGIETPTNGSPRKNKWRKKSRDRKSGGGDQENSSLHRIQGRMVMSGCSKIACLHTQQGKKGTNQDAMIVWENFGSRNNAVFCGV FDGHGPSGHMVARRVRDSLPILLNKQWQVGANGEHSSLEKTGNSLGSMDSEENSSVCGDDESYDSMEVEESDKVPEMYVPLKRSMLKAFKLMDKELKLHP TIDCFCSGTTAVTLIKLDEDLILGNVGDSRAVLATRADDNSLLAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNSDSPGLAMARAFGDF CLKDFGLISVPDLFYRRLTLKDEFIILASDGVWDVLSNKEAVDIVASAPGRATAARALIDCAVRAWKLKYPTSKNDDCAVVCLFLDHSLAENGTEEGLGT KEEPAAAQASTVSGDTEMHENSHDHVLTHSGTTRCSDEIVPVSESTEVKINATSQTRSQSKRSLAECISSREEDEWSALEGITRVNSLLSIPRFLSGDRR SSGSRRKWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79630			Protein phosphatase 2C family ...		Lus10000402 [exp]	0	1
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	4.0	0.7930
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10030202 [exp]	4.5	0.7947
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10032594 [exp]	4.9	0.7817
AT3G17920			Outer arm dynein light chain 1...		Lus10041988 [exp]	5.0	0.8133
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10004509 [exp]	11.0	0.7791
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10006078 [exp]	13.1	0.7699
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10015457 [exp]	14.7	0.7824
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	18.0	0.7787
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039414 [exp]	18.8	0.7868
AT4G38520			Protein phosphatase 2C family ...		Lus10024008 [exp]	19.0	0.7421

Compare expression of checked genes

Lus10000402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.